Resource
| Id | DNase-seq/ENCSR000EMG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMG [biosample_summary="Homo sapiens HS-5"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF143UAJ|/files/ENCFF143UAJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39576336 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMG | float |
DNase-seq_ENCSR000EMG |
DNase-seq ENCSR000EMG [biosample_summary="Homo sapiens HS-5"]
|
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[0.152, 49.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16871402 | 0.52% | 84582 |
| chr1 | 1559417 | 0.63% | 7746 |
| chr2 | 1549833 | 0.64% | 7801 |
| chr3 | 1243884 | 0.63% | 6197 |
| chr4 | 958841 | 0.50% | 4889 |
| chr5 | 1121126 | 0.62% | 5547 |
| chr6 | 1132068 | 0.66% | 5661 |
| chr7 | 824190 | 0.52% | 4133 |
| chr8 | 927081 | 0.64% | 4621 |
| chr9 | 716779 | 0.52% | 3617 |
| chr10 | 667313 | 0.50% | 3423 |
| chr11 | 867923 | 0.64% | 4310 |
| chr12 | 895091 | 0.67% | 4414 |
| chr13 | 304984 | 0.27% | 1595 |
| chr14 | 482835 | 0.45% | 2473 |
| chr15 | 500163 | 0.49% | 2513 |
| chr16 | 416747 | 0.46% | 2091 |
| chr17 | 584281 | 0.70% | 2920 |
| chr18 | 333698 | 0.42% | 1718 |
| chr19 | 463676 | 0.79% | 2209 |
| chr20 | 484312 | 0.75% | 2376 |
| chr21 | 198437 | 0.42% | 1013 |
| chr22 | 228191 | 0.45% | 1170 |
| chrX | 383974 | 0.25% | 2007 |
| chrY | 26558 | 0.05% | 138 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 84582 | 1 | 900 | 199.47 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF791TKP.bed.gz | 892.43 KB | e7f17b37b16e57d6a0ae9e1e1c4d5d20 |
| ENCFF791TKP.tabix.bed.gz | 801.39 KB | 51643c71bf995aa1edfd3b20518fbaa7 |
| ENCFF791TKP.tabix.bed.gz.tbi | 430.65 KB | 803e7c8f54fa18b2ba93e1fe58e815ca |
| genomic_resource.yaml | 1.7 KB | 23b090dafa503e9227a56323dad55dc6 |
| statistics/ |
