Resource
| Id | DNase-seq/ENCSR000EME |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EME [biosample_summary="Homo sapiens BJ"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF274NTT|/files/ENCFF274NTT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24311777 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF052HPJ|/files/ENCFF052HPJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26989479 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EME | float |
DNase-seq_ENCSR000EME |
DNase-seq ENCSR000EME [biosample_summary="Homo sapiens BJ"]
|
 |
[0.25, 61] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12769252 | 0.40% | 64863 |
| chr1 | 1196336 | 0.48% | 6063 |
| chr2 | 1096962 | 0.45% | 5582 |
| chr3 | 900206 | 0.45% | 4571 |
| chr4 | 656133 | 0.34% | 3371 |
| chr5 | 763446 | 0.42% | 3864 |
| chr6 | 832854 | 0.49% | 4201 |
| chr7 | 622629 | 0.39% | 3194 |
| chr8 | 645819 | 0.44% | 3271 |
| chr9 | 546010 | 0.39% | 2748 |
| chr10 | 625356 | 0.47% | 3173 |
| chr11 | 620172 | 0.46% | 3111 |
| chr12 | 646925 | 0.49% | 3293 |
| chr13 | 365800 | 0.32% | 1870 |
| chr14 | 374066 | 0.35% | 1885 |
| chr15 | 421168 | 0.41% | 2114 |
| chr16 | 365686 | 0.40% | 1911 |
| chr17 | 493897 | 0.59% | 2521 |
| chr18 | 294051 | 0.37% | 1504 |
| chr19 | 374249 | 0.64% | 1853 |
| chr20 | 297435 | 0.46% | 1517 |
| chr21 | 147670 | 0.32% | 743 |
| chr22 | 184491 | 0.36% | 949 |
| chrX | 283665 | 0.18% | 1478 |
| chrY | 14226 | 0.02% | 76 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64863 | 9 | 740 | 196.86 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF812QOW.bed.gz | 708.84 KB | e5b3e29fdd7e59be24ef08dbbfe79d7c |
| ENCFF812QOW.tabix.bed.gz | 629.04 KB | 7e48c6b17a884df2ccd828cda50f053e |
| ENCFF812QOW.tabix.bed.gz.tbi | 354.1 KB | 0d0b676f3191945178979c22634bb790 |
| genomic_resource.yaml | 2.33 KB | 4924454197424d09f50db006b449aad0 |
| statistics/ |