DNase-seq_ENCSR000EME
DNase-seq ENCSR000EME [biosample_summary="Homo sapiens BJ"]
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| Id: | DNase-seq/ENCSR000EME |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EME [biosample_summary="Homo sapiens BJ"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF274NTT|/files/ENCFF274NTT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24311777 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF052HPJ|/files/ENCFF052HPJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26989479 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EME | float |
DNase-seq_ENCSR000EME |
DNase-seq ENCSR000EME [biosample_summary="Homo sapiens BJ"]
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[0.25, 61] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF812QOW.bed.gz | 708.84 KB | e5b3e29fdd7e59be24ef08dbbfe79d7c |
| ENCFF812QOW.bed.gz.dvc | 100.0 B | 3428391bb4b46546d8b0c3aabc4ec924 |
| ENCFF812QOW.tabix.bed.gz | 629.04 KB | 7e48c6b17a884df2ccd828cda50f053e |
| ENCFF812QOW.tabix.bed.gz.dvc | 106.0 B | 68e5399e609ade387dcad0d0db8ef8af |
| ENCFF812QOW.tabix.bed.gz.tbi | 354.1 KB | 0d0b676f3191945178979c22634bb790 |
| ENCFF812QOW.tabix.bed.gz.tbi.dvc | 110.0 B | 0007e39efc45f2951b5e594a1e4bfd99 |
| genomic_resource.yaml | 2.33 KB | 4924454197424d09f50db006b449aad0 |
| genomic_resource_original.yaml | 2.27 KB | 05fa95c4c3df6d6c36d1602ab943e692 |
| statistics/ |