| Id: | DNase-seq/ENCSR000EMD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF202QAJ|/files/ENCFF202QAJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41979323 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMD | float |
DNase-seq_ENCSR000EMD |
DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"]
|
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[0.156, 1.94e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF310GHH.bed.gz | 1.05 MB | a4bb53cdfb73a61d4313560d6e29fa97 |
| ENCFF310GHH.bed.gz.dvc | 101.0 B | 8afec5f61a9d33b64447cf6c21f766eb |
| ENCFF310GHH.tabix.bed.gz | 971.73 KB | a277efc3a38ed62301a3f684948f8ce1 |
| ENCFF310GHH.tabix.bed.gz.dvc | 106.0 B | 73fdebbf212b6dd095cf55efab63874f |
| ENCFF310GHH.tabix.bed.gz.tbi | 460.58 KB | 168a02019aa763511f339e21cb10c115 |
| ENCFF310GHH.tabix.bed.gz.tbi.dvc | 110.0 B | 6520d8be6fbc05232320b2860f2735a5 |
| genomic_resource.yaml | 1.69 KB | 1d26bc8a2d997c014c453dbd2a66be1d |
| genomic_resource_original.yaml | 1.63 KB | 75ff52649797759307e39b9a0c033276 |
| statistics/ |