Resource

Id DNase-seq/ENCSR000EMDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"]
Description
Labels
  • accession: ENCSR000EMD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005725/
  • biosample_summary: Homo sapiens BE2C
  • date_created: 2013-12-12T07:08:12.101777+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000EMD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMD float

DNase-seq_ENCSR000EMD

DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"]
HISTOGRAM FOR DNase-seq_ENCSR000EMD [0.156, 1.94e+03]
n
18,506,068
mean
2.98
sd
8.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 185060680.58% 100164
chr1 1626981 0.65% 8817
chr2 1459727 0.60% 7953
chr3 1218393 0.61% 6621
chr4 1041902 0.55% 5715
chr5 1182616 0.65% 6418
chr6 1122620 0.66% 6045
chr7 1017660 0.64% 5507
chr8 902940 0.62% 4902
chr9 793855 0.57% 4285
chr10 855579 0.64% 4659
chr11 892766 0.66% 4794
chr12 881010 0.66% 4752
chr13 615904 0.54% 3326
chr14 578528 0.54% 3120
chr15 635080 0.62% 3435
chr16 560893 0.62% 3012
chr17 702771 0.84% 3789
chr18 311110 0.39% 1718
chr19 613109 1.05% 3200
chr20 470109 0.73% 2548
chr21 217629 0.47% 1178
chr22 346971 0.68% 1888
chrX 457503 0.29% 2479
chrY 412 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100164 3 940 184.76 180
global segment-length histogram

Files

Filename Size md5
ENCFF310GHH.bed.gz 1.05 MB a4bb53cdfb73a61d4313560d6e29fa97
ENCFF310GHH.tabix.bed.gz 971.73 KB a277efc3a38ed62301a3f684948f8ce1
ENCFF310GHH.tabix.bed.gz.tbi 460.58 KB 168a02019aa763511f339e21cb10c115
genomic_resource.yaml 1.69 KB 1d26bc8a2d997c014c453dbd2a66be1d
statistics/