Resource
| Id | DNase-seq/ENCSR000EMD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF202QAJ|/files/ENCFF202QAJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41979323 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMD | float |
DNase-seq_ENCSR000EMD |
DNase-seq ENCSR000EMD [biosample_summary="Homo sapiens BE2C"]
|
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[0.156, 1.94e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18506068 | 0.58% | 100164 |
| chr1 | 1626981 | 0.65% | 8817 |
| chr2 | 1459727 | 0.60% | 7953 |
| chr3 | 1218393 | 0.61% | 6621 |
| chr4 | 1041902 | 0.55% | 5715 |
| chr5 | 1182616 | 0.65% | 6418 |
| chr6 | 1122620 | 0.66% | 6045 |
| chr7 | 1017660 | 0.64% | 5507 |
| chr8 | 902940 | 0.62% | 4902 |
| chr9 | 793855 | 0.57% | 4285 |
| chr10 | 855579 | 0.64% | 4659 |
| chr11 | 892766 | 0.66% | 4794 |
| chr12 | 881010 | 0.66% | 4752 |
| chr13 | 615904 | 0.54% | 3326 |
| chr14 | 578528 | 0.54% | 3120 |
| chr15 | 635080 | 0.62% | 3435 |
| chr16 | 560893 | 0.62% | 3012 |
| chr17 | 702771 | 0.84% | 3789 |
| chr18 | 311110 | 0.39% | 1718 |
| chr19 | 613109 | 1.05% | 3200 |
| chr20 | 470109 | 0.73% | 2548 |
| chr21 | 217629 | 0.47% | 1178 |
| chr22 | 346971 | 0.68% | 1888 |
| chrX | 457503 | 0.29% | 2479 |
| chrY | 412 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 100164 | 3 | 940 | 184.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF310GHH.bed.gz | 1.05 MB | a4bb53cdfb73a61d4313560d6e29fa97 |
| ENCFF310GHH.tabix.bed.gz | 971.73 KB | a277efc3a38ed62301a3f684948f8ce1 |
| ENCFF310GHH.tabix.bed.gz.tbi | 460.58 KB | 168a02019aa763511f339e21cb10c115 |
| genomic_resource.yaml | 1.69 KB | 1d26bc8a2d997c014c453dbd2a66be1d |
| statistics/ |
