DNase-seq_ENCSR000EMC
DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"]
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| Id: | DNase-seq/ENCSR000EMC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female output_type: peaks audit_warning: Alignment file {ENCFF564GKX|/files/ENCFF564GKX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30639778 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMC | float |
DNase-seq_ENCSR000EMC |
DNase-seq ENCSR000EMC [biosample_summary="Homo sapiens fibroblast of the aortic adventitia female"]
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[0.0252, 53.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF120WYH.bed.gz | 2.76 MB | 38a41a683f5a5ba6dca03a5818cffaf6 |
| ENCFF120WYH.bed.gz.dvc | 101.0 B | 20c0e4a848df33ca4cc0083b5699eb88 |
| ENCFF120WYH.tabix.bed.gz | 2.52 MB | 992f4d56a20683f3ce97e63e7b57d405 |
| ENCFF120WYH.tabix.bed.gz.dvc | 107.0 B | f7739a2bb07c98c80a002e884299f2d9 |
| ENCFF120WYH.tabix.bed.gz.tbi | 684.22 KB | 19edf79f25dd1b1bbe1bdc1e2d30f882 |
| ENCFF120WYH.tabix.bed.gz.tbi.dvc | 110.0 B | f35b0ba43abee989df67438248a5b7a5 |
| genomic_resource.yaml | 1.8 KB | 916d9ef080e74a21d07337011fcb0efe |
| genomic_resource_original.yaml | 1.7 KB | 77af2b0b6ef9471cb661918a227e1952 |
| statistics/ |