Resource

Id DNase-seq/ENCSR000EMBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMB [biosample_summary="Homo sapiens AG10803"]
Description
Labels
  • accession: ENCSR000EMB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0021511/
  • biosample_summary: Homo sapiens AG10803
  • date_created: 2014-01-16T21:43:39.905334+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EMB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMB float

DNase-seq_ENCSR000EMB
DNase-seq ENCSR000EMB [biosample_summary="Homo sapiens AG10803"]
 HISTOGRAM FOR DNase-seq_ENCSR000EMB [0.0336, 59.3]
n
45,165,557
mean
2.12
sd
3.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 451655571.40% 243423
chr1 4158001 1.67% 22526
chr2 3853573 1.59% 20792
chr3 3091396 1.56% 16689
chr4 2318062 1.22% 12642
chr5 2680103 1.48% 14368
chr6 2863019 1.68% 15330
chr7 2307878 1.45% 12551
chr8 2206841 1.52% 11855
chr9 1932916 1.40% 10372
chr10 2231242 1.67% 11996
chr11 2202020 1.63% 11780
chr12 2222505 1.67% 12017
chr13 1235086 1.08% 6718
chr14 1348016 1.26% 7232
chr15 1543538 1.51% 8257
chr16 1285866 1.42% 6955
chr17 1769326 2.13% 9453
chr18 1032589 1.28% 5607
chr19 1162822 1.98% 6177
chr20 1128620 1.75% 6044
chr21 534812 1.14% 2847
chr22 719977 1.42% 3897
chrX 1265317 0.81% 6919
chrY 72032 0.13% 399
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 243423 4 880 185.54 180
global segment-length histogram

Files

Filename Size md5
ENCFF472VYR.bed.gz 2.62 MB 17a6c87d96e58a5246b4658de707b4d8
ENCFF472VYR.tabix.bed.gz 2.38 MB 7a4e591f2ce8f788b6caaaedc640ae81
ENCFF472VYR.tabix.bed.gz.tbi 676.11 KB 30ec1ad4b96896925c345ad80e4b9369
genomic_resource.yaml 1.7 KB d467a5c131eb4d54e9add191218d5709
statistics/