DNase-seq_ENCSR000EMA
DNase-seq ENCSR000EMA [biosample_summary="Homo sapiens AG09319"]
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| Id: | DNase-seq/ENCSR000EMA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EMA [biosample_summary="Homo sapiens AG09319"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_error: Alignment file {ENCFF505WFU|/files/ENCFF505WFU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 19049607 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF952NYQ|/files/ENCFF952NYQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21126838 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMA | float |
DNase-seq_ENCSR000EMA |
DNase-seq ENCSR000EMA [biosample_summary="Homo sapiens AG09319"]
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[0.286, 69.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF913LOH.bed.gz | 712.41 KB | e07e408d9506af42e0b908db7e3000ad |
| ENCFF913LOH.bed.gz.dvc | 100.0 B | 15c385dc7728b44e8f2554c1969d176c |
| ENCFF913LOH.tabix.bed.gz | 633.9 KB | 3e9a29a2e9f9f13c3dbee4700847f484 |
| ENCFF913LOH.tabix.bed.gz.dvc | 106.0 B | d60848e399c47f924fa3106b670547bc |
| ENCFF913LOH.tabix.bed.gz.tbi | 355.71 KB | 42aa970525f576b9b84c1573a8c7992b |
| ENCFF913LOH.tabix.bed.gz.tbi.dvc | 110.0 B | 98a5caeac0ed365f47b7e80872e2b2de |
| genomic_resource.yaml | 2.34 KB | 941ab20656c598b3d03fe4a54127b0e4 |
| genomic_resource_original.yaml | 2.27 KB | 586523919b663168f234b9c182287296 |
| statistics/ |