Resource
| Id | DNase-seq/ENCSR000EMA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMA [biosample_summary="Homo sapiens AG09319"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_error: Alignment file {ENCFF505WFU|/files/ENCFF505WFU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 19049607 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF952NYQ|/files/ENCFF952NYQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21126838 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMA | float |
DNase-seq_ENCSR000EMA |
DNase-seq ENCSR000EMA [biosample_summary="Homo sapiens AG09319"]
|
 |
[0.286, 69.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11872106 | 0.37% | 66545 |
| chr1 | 1117027 | 0.45% | 6281 |
| chr2 | 950690 | 0.39% | 5338 |
| chr3 | 797198 | 0.40% | 4519 |
| chr4 | 553465 | 0.29% | 3164 |
| chr5 | 677323 | 0.37% | 3771 |
| chr6 | 733303 | 0.43% | 4089 |
| chr7 | 587838 | 0.37% | 3321 |
| chr8 | 570976 | 0.39% | 3196 |
| chr9 | 522164 | 0.38% | 2897 |
| chr10 | 558989 | 0.42% | 3149 |
| chr11 | 594458 | 0.44% | 3296 |
| chr12 | 607569 | 0.46% | 3393 |
| chr13 | 286848 | 0.25% | 1614 |
| chr14 | 375173 | 0.35% | 2100 |
| chr15 | 404919 | 0.40% | 2230 |
| chr16 | 375597 | 0.42% | 2130 |
| chr17 | 510888 | 0.61% | 2849 |
| chr18 | 262058 | 0.33% | 1495 |
| chr19 | 431475 | 0.74% | 2321 |
| chr20 | 312245 | 0.48% | 1765 |
| chr21 | 129190 | 0.28% | 717 |
| chr22 | 210718 | 0.41% | 1192 |
| chrX | 301855 | 0.19% | 1717 |
| chrY | 140 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66545 | 3 | 740 | 178.41 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF913LOH.bed.gz | 712.41 KB | e07e408d9506af42e0b908db7e3000ad |
| ENCFF913LOH.tabix.bed.gz | 633.9 KB | 3e9a29a2e9f9f13c3dbee4700847f484 |
| ENCFF913LOH.tabix.bed.gz.tbi | 355.71 KB | 42aa970525f576b9b84c1573a8c7992b |
| genomic_resource.yaml | 2.34 KB | 941ab20656c598b3d03fe4a54127b0e4 |
| statistics/ |