Resource

Id DNase-seq/ENCSR000ELZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ELZ [biosample_summary="Homo sapiens AG09309"]
Description
Labels
  • accession: ENCSR000ELZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0021752/
  • biosample_summary: Homo sapiens AG09309
  • date_created: 2013-09-13T16:00:50.477489-08:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ELZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ELZ float

DNase-seq_ENCSR000ELZ
DNase-seq ENCSR000ELZ [biosample_summary="Homo sapiens AG09309"]
 HISTOGRAM FOR DNase-seq_ENCSR000ELZ [2, 5.5e+03]
n
18,828,579
mean
72.8
sd
82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 188285790.59% 125406
chr1 1780880 0.72% 11863
chr2 1595910 0.66% 10628
chr3 1329000 0.67% 8850
chr4 1026000 0.54% 6833
chr5 1134372 0.62% 7549
chr6 1217550 0.71% 8115
chr7 949500 0.60% 6323
chr8 913007 0.63% 6082
chr9 788550 0.57% 5250
chr10 911100 0.68% 6070
chr11 905626 0.67% 6036
chr12 977986 0.73% 6514
chr13 515400 0.45% 3432
chr14 568880 0.53% 3791
chr15 611813 0.60% 4075
chr16 540677 0.60% 3601
chr17 710296 0.85% 4733
chr18 431027 0.54% 2871
chr19 489300 0.83% 3257
chr20 445950 0.69% 2970
chr21 221658 0.47% 1476
chr22 279981 0.55% 1864
chrX 482616 0.31% 3213
chrY 1500 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125406 53 396 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF952FSO.bed.gz 1.19 MB 818dc2b0822b90e6de92e7da57d7541a
ENCFF952FSO.tabix.bed.gz 1.03 MB ec7b49ad0ba8e8d2f9bce013fcdd5db9
ENCFF952FSO.tabix.bed.gz.tbi 529.31 KB 1f20edcaa76f6d1f9ebf7d539d06e0cf
genomic_resource.yaml 1.26 KB a6bc163024591eea3d5b342ad2eb8bd3
statistics/