DNase-seq_ENCSR000ELX
DNase-seq ENCSR000ELX [biosample_summary="Homo sapiens AG04449"]
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| Id: | DNase-seq/ENCSR000ELX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELX [biosample_summary="Homo sapiens AG04449"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN953ASI|/analyses/ENCAN953ASI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF270GSM|/files/ENCFF270GSM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31715166 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF755DTB|/files/ENCFF755DTB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28983974 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF279WTM|/files/ENCFF279WTM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31526395 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF881KPD|/files/ENCFF881KPD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28822973 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELX | float |
DNase-seq_ENCSR000ELX |
DNase-seq ENCSR000ELX [biosample_summary="Homo sapiens AG04449"]
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[3, 2.78e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF984DFQ.bed.gz | 829.05 KB | 831198aa9adce95b168dc5dc54a0a0e5 |
| ENCFF984DFQ.bed.gz.dvc | 100.0 B | b0c0a424a3b747988b35c22435210e4e |
| ENCFF984DFQ.tabix.bed.gz | 713.29 KB | 7039c7f1fc48ecc6c097a5658432d49f |
| ENCFF984DFQ.tabix.bed.gz.dvc | 106.0 B | d45a9fab1eae603c22387413af9484c6 |
| ENCFF984DFQ.tabix.bed.gz.tbi | 441.92 KB | 87f9379e0d5cf378f45301933005cf34 |
| ENCFF984DFQ.tabix.bed.gz.tbi.dvc | 110.0 B | c8cb1d39831fa97820e865a467f4b442 |
| genomic_resource.yaml | 3.74 KB | 1b796c0798a29b585e7333b0290e2262 |
| genomic_resource_original.yaml | 3.67 KB | 1da80bf5c7536a62f756305ea8f4cbcb |
| statistics/ |