Resource

Id DNase-seq/ENCSR000ELWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ELW [biosample_summary="Homo sapiens A549"]
Description
Labels
  • accession: ENCSR000ELW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2013-12-12T07:08:04.492631+00:00
  • date_released: 2016-07-21
  • doi: 10.17989/ENCSR000ELW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ELW float

DNase-seq_ENCSR000ELW
DNase-seq ENCSR000ELW [biosample_summary="Homo sapiens A549"]
 HISTOGRAM FOR DNase-seq_ENCSR000ELW [0.0393, 111]
n
27,093,717
mean
2.63
sd
5.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 270937170.84% 143762
chr1 2391423 0.96% 12614
chr2 2180240 0.90% 11655
chr3 1615958 0.81% 8691
chr4 1251987 0.66% 6830
chr5 1496074 0.82% 7996
chr6 1514561 0.89% 8027
chr7 1390473 0.87% 7462
chr8 1270346 0.88% 6762
chr9 1166279 0.84% 6152
chr10 1290920 0.96% 6876
chr11 1299057 0.96% 6893
chr12 1546382 1.16% 8053
chr13 607570 0.53% 3314
chr14 874137 0.82% 4658
chr15 932481 0.91% 4911
chr16 875969 0.97% 4649
chr17 1335466 1.60% 6891
chr18 530939 0.66% 2856
chr19 1103306 1.88% 5546
chr20 786948 1.22% 4147
chr21 263165 0.56% 1384
chr22 462417 0.91% 2449
chrX 870525 0.56% 4732
chrY 37094 0.06% 214
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 143762 1 920 188.46 180
global segment-length histogram

Files

Filename Size md5
ENCFF128ZVL.bed.gz 1.55 MB fe838d13b4f90aee9183969f3f72e4b3
ENCFF128ZVL.tabix.bed.gz 1.42 MB 01ea498d1a6ad6c5bb2ae88b3adc1978
ENCFF128ZVL.tabix.bed.gz.tbi 535.55 KB 399166271864018e7cac287e72f65610
genomic_resource.yaml 1.69 KB 72ea1fd174e6db99e3b5fd04eefa31be
statistics/