DNase-seq_ENCSR000ELT
DNase-seq ENCSR000ELT [biosample_summary="Homo sapiens T47D"]
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| Id: | DNase-seq/ENCSR000ELT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELT [biosample_summary="Homo sapiens T47D"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN523JUP|/analyses/ENCAN523JUP/} has in progress subobject document {506d8842-d136-4373-949d-f012142e41f3|/documents/506d8842-d136-4373-949d-f012142e41f3/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF003TSN|/files/ENCFF003TSN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELT | float |
DNase-seq_ENCSR000ELT |
DNase-seq ENCSR000ELT [biosample_summary="Homo sapiens T47D"]
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[0.0799, 25.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF606YYY.bed.gz | 694.19 KB | 4bb58bf7bf7905a4ee47a2f6b11abb0c |
| ENCFF606YYY.bed.gz.dvc | 100.0 B | 42ef6d2438a7d46277878c314e1a9b94 |
| ENCFF606YYY.tabix.bed.gz | 628.76 KB | e9ae6c4a596c8444af6d44ffa5cd36df |
| ENCFF606YYY.tabix.bed.gz.dvc | 106.0 B | 88070f45426499a15b5d3a803101e1eb |
| ENCFF606YYY.tabix.bed.gz.tbi | 307.84 KB | d5703caa8f474db290ed70e666d20c57 |
| ENCFF606YYY.tabix.bed.gz.tbi.dvc | 110.0 B | 3d4c8d0c7ccb04b3c86f8252ba7d889a |
| genomic_resource.yaml | 2.12 KB | 5ac179d3e858f8c3aaaa47033e8c186e |
| genomic_resource_original.yaml | 2.05 KB | bb0ccdd4525dcb83681b7c380f175e07 |
| statistics/ |