Resource

Id DNase-seq/ENCSR000ELTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ELT [biosample_summary="Homo sapiens T47D"]
Description
Labels
  • accession: ENCSR000ELT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001247/
  • biosample_summary: Homo sapiens T47D
  • date_created: 2014-01-13T00:06:59.868987+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000ELT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ELT float

DNase-seq_ENCSR000ELT

DNase-seq ENCSR000ELT [biosample_summary="Homo sapiens T47D"]
HISTOGRAM FOR DNase-seq_ENCSR000ELT [0.0799, 25.7]
n
11,262,933
mean
1.82
sd
1.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 112629330.35% 64223
chr1 1067718 0.43% 6089
chr2 675715 0.28% 4006
chr3 746737 0.38% 4253
chr4 399473 0.21% 2388
chr5 606644 0.33% 3445
chr6 566188 0.33% 3316
chr7 550946 0.35% 3148
chr8 507616 0.35% 2910
chr9 503092 0.36% 2842
chr10 540522 0.40% 3099
chr11 686403 0.51% 3869
chr12 584094 0.44% 3280
chr13 215295 0.19% 1270
chr14 441772 0.41% 2460
chr15 383774 0.38% 2206
chr16 456663 0.51% 2521
chr17 659663 0.79% 3634
chr18 184336 0.23% 1084
chr19 536899 0.92% 2913
chr20 353320 0.55% 1999
chr21 134068 0.29% 775
chr22 212911 0.42% 1215
chrX 249084 0.16% 1501
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64223 2 760 175.37 177
global segment-length histogram

Files

Filename Size md5
ENCFF606YYY.bed.gz 694.19 KB 4bb58bf7bf7905a4ee47a2f6b11abb0c
ENCFF606YYY.tabix.bed.gz 628.76 KB e9ae6c4a596c8444af6d44ffa5cd36df
ENCFF606YYY.tabix.bed.gz.tbi 307.84 KB d5703caa8f474db290ed70e666d20c57
genomic_resource.yaml 2.12 KB 5ac179d3e858f8c3aaaa47033e8c186e
statistics/