Resource

Id DNase-seq/ENCSR000ELRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ELR [biosample_summary="Homo sapiens hepatic stellate cell female adult (59 years)"]
Description
Labels
  • accession: ENCSR000ELR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000632/
  • biosample_summary: Homo sapiens hepatic stellate cell female adult (59 years)
  • date_created: 2014-01-30T18:52:49.933505+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000ELR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ELR float

DNase-seq_ENCSR000ELR

DNase-seq ENCSR000ELR [biosample_summary="Homo sapiens hepatic stellate cell female adult (59 years)"]
HISTOGRAM FOR DNase-seq_ENCSR000ELR [6, 48]
n
23,400
mean
14.4
sd
5.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 23400<0.01% 156
chr1 1950 <0.01% 13
chr2 1050 <0.01% 7
chr3 1800 <0.01% 12
chr4 1050 <0.01% 7
chr5 1350 <0.01% 9
chr6 600 <0.01% 4
chr7 1350 <0.01% 9
chr8 1200 <0.01% 8
chr9 1350 <0.01% 9
chr10 450 <0.01% 3
chr11 750 <0.01% 5
chr12 1650 <0.01% 11
chr13 300 <0.01% 2
chr14 300 <0.01% 2
chr15 1200 <0.01% 8
chr16 900 <0.01% 6
chr17 1500 <0.01% 10
chr18 150 <0.01% 1
chr19 2700 <0.01% 18
chr20 1200 <0.01% 8
chr21 150 <0.01% 1
chr22 450 <0.01% 3
3344 contigs with no values (342345395 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 156 150 150 150 150
global segment-length histogram

Files

Filename Size md5
ENCFF801KLJ.bed.gz 1.8 KB b87f0ac776f01076e505d6b6c15c2c46
ENCFF801KLJ.tabix.bed.gz 1.49 KB b2a78583dce4a388a18ed149cf81d8bf
ENCFF801KLJ.tabix.bed.gz.tbi 5.26 KB a6a029023d47f0f0262a6022356d3c22
genomic_resource.yaml 2.81 KB f9d1c6ca6c1ebbc63240958ed209105e
statistics/