DNase-seq_ENCSR000ELP
DNase-seq ENCSR000ELP [biosample_summary="Homo sapiens RWPE1"]
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| Id: | DNase-seq/ENCSR000ELP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELP [biosample_summary="Homo sapiens RWPE1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Alignment file {ENCFF497SLL|/files/ENCFF497SLL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 652848 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN103OKD|/analyses/ENCAN103OKD/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF497SLL|/files/ENCFF497SLL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELP | float |
DNase-seq_ENCSR000ELP |
DNase-seq ENCSR000ELP [biosample_summary="Homo sapiens RWPE1"]
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[6, 89] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF065JGY.bed.gz | 12.18 KB | 9115afdbcb09852518552d3655f61242 |
| ENCFF065JGY.bed.gz.dvc | 99.0 B | 4db94c5e283c7f7ddb3ac39483a99a73 |
| ENCFF065JGY.tabix.bed.gz | 10.35 KB | 782e9ce7d49475e600d19793a792e84a |
| ENCFF065JGY.tabix.bed.gz.dvc | 105.0 B | 3e58dec9efa3d42b5ddd1d1df4a106e2 |
| ENCFF065JGY.tabix.bed.gz.tbi | 16.91 KB | 81bff7726a11612aeca8b6561f0ae418 |
| ENCFF065JGY.tabix.bed.gz.tbi.dvc | 109.0 B | 9fee62c175c28530460bc17275c841aa |
| genomic_resource.yaml | 2.7 KB | 9faa2f6527e81543b37c8013015125de |
| genomic_resource_original.yaml | 2.63 KB | 4c97f439814f4376cc6e314671f9fd5b |
| statistics/ |