DNase-seq_ENCSR000ELO
DNase-seq ENCSR000ELO [biosample_summary="Homo sapiens psoas muscle tissue male adult (27 years) and male adult (35 years)"]
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| Id: | DNase-seq/ENCSR000ELO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELO [biosample_summary="Homo sapiens psoas muscle tissue male adult (27 years) and male adult (35 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN634ADV|/analyses/ENCAN634ADV/} has in progress subobject document {0decec07-b82c-476d-8b56-ea1eede891db|/documents/0decec07-b82c-476d-8b56-ea1eede891db/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF714MIK|/files/ENCFF714MIK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELO | float |
DNase-seq_ENCSR000ELO |
DNase-seq ENCSR000ELO [biosample_summary="Homo sapiens psoas muscle tissue male adult (27 years) and male adult (35 years)"]
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[0.064, 33.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF336IOL.bed.gz | 1.12 MB | c30771453da13cf7770f5e6a5046693d |
| ENCFF336IOL.bed.gz.dvc | 101.0 B | cdd2928a4e4c0d9bf53244497b2584ab |
| ENCFF336IOL.tabix.bed.gz | 1.03 MB | 6b1c71c9ab9aee2a81b3af7f2806d47a |
| ENCFF336IOL.tabix.bed.gz.dvc | 107.0 B | a8ac5c6ccd7fb904045681c986bc4048 |
| ENCFF336IOL.tabix.bed.gz.tbi | 369.7 KB | 421b637ac51fd012da22c93b0d0573de |
| ENCFF336IOL.tabix.bed.gz.tbi.dvc | 110.0 B | 403c7d3e3967573a935919a6e4466f52 |
| genomic_resource.yaml | 2.36 KB | e373b6330e4a0842a3228df75c216a9a |
| genomic_resource_original.yaml | 2.24 KB | 4e10425ac28a9ab5729dd1a465daf97e |
| statistics/ |