| Id: | DNase-seq/ENCSR000ELJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELJ [biosample_summary="Homo sapiens osteoblast"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Missing footprints in ENCODE4 DNase-seq analysis {ENCAN854QFL|/analyses/ENCAN854QFL/} audit_internal_action: Released analysis {ENCAN854QFL|/analyses/ENCAN854QFL/} has in progress subobject document {be857241-de58-43f7-8dfd-5427b7e3fcdc|/documents/be857241-de58-43f7-8dfd-5427b7e3fcdc/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF602ZVM|/files/ENCFF602ZVM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELJ | float |
DNase-seq_ENCSR000ELJ |
DNase-seq ENCSR000ELJ [biosample_summary="Homo sapiens osteoblast"]
|
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[0.0315, 30.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF195EHM.bed.gz | 4.82 MB | cd0520a3b3bfc8ab81de55796fc77815 |
| ENCFF195EHM.bed.gz.dvc | 101.0 B | c44d13dbe616a6b37a1ba13f5fd05dd5 |
| ENCFF195EHM.tabix.bed.gz | 4.42 MB | e8f5456549f8c083dc5008023f975548 |
| ENCFF195EHM.tabix.bed.gz.dvc | 107.0 B | 24b8845d422814ccfaabfbe97aa7f39a |
| ENCFF195EHM.tabix.bed.gz.tbi | 775.39 KB | 7fc4309665b4b008f10bd079345a75ae |
| ENCFF195EHM.tabix.bed.gz.tbi.dvc | 110.0 B | 936a245e0b3241bcdf51d31ce02160d1 |
| genomic_resource.yaml | 2.42 KB | 7546c038e20f5a4767f920d18d24c04a |
| genomic_resource_original.yaml | 2.34 KB | b1cf532722dc186fb5468aaa09e1b48a |
| statistics/ |