Resource
| Id | DNase-seq/ENCSR000ELG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ELG [biosample_summary="Homo sapiens naive B cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN782UVR|/analyses/ENCAN782UVR/} has in progress subobject document {833b8d7b-5b16-468b-9c89-c8eb824810cf|/documents/833b8d7b-5b16-468b-9c89-c8eb824810cf/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF918TNU|/files/ENCFF918TNU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELG | float |
DNase-seq_ENCSR000ELG |
DNase-seq ENCSR000ELG [biosample_summary="Homo sapiens naive B cell"]
|
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[0.0338, 23.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16714299 | 0.52% | 85955 |
| chr1 | 1596082 | 0.64% | 8164 |
| chr2 | 1267810 | 0.52% | 6514 |
| chr3 | 1002812 | 0.51% | 5134 |
| chr4 | 690272 | 0.36% | 3514 |
| chr5 | 785644 | 0.43% | 4037 |
| chr6 | 1052022 | 0.62% | 5337 |
| chr7 | 781248 | 0.49% | 4049 |
| chr8 | 697541 | 0.48% | 3626 |
| chr9 | 660205 | 0.48% | 3424 |
| chr10 | 752174 | 0.56% | 3901 |
| chr11 | 867762 | 0.64% | 4443 |
| chr12 | 896525 | 0.67% | 4573 |
| chr13 | 351401 | 0.31% | 1841 |
| chr14 | 558052 | 0.52% | 2861 |
| chr15 | 543274 | 0.53% | 2814 |
| chr16 | 606968 | 0.67% | 3124 |
| chr17 | 863157 | 1.04% | 4474 |
| chr18 | 322701 | 0.40% | 1626 |
| chr19 | 868708 | 1.48% | 4399 |
| chr20 | 456168 | 0.71% | 2371 |
| chr21 | 193798 | 0.41% | 1007 |
| chr22 | 378766 | 0.75% | 1961 |
| chrX | 501951 | 0.32% | 2655 |
| chrY | 19258 | 0.03% | 106 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85955 | 1 | 1000 | 194.45 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF440AXZ.bed.gz | 949.2 KB | 84829ba9bc252bcb52556ca1c91f5c85 |
| ENCFF440AXZ.tabix.bed.gz | 874.73 KB | f2bce5573cad3f36b7211bd60954168e |
| ENCFF440AXZ.tabix.bed.gz.tbi | 323.74 KB | 586a6364d92dcce396a56cc203e66880 |
| genomic_resource.yaml | 2.15 KB | aa0f850c1b8dab7e09ad989c9698b171 |
| statistics/ |
