DNase-seq_ENCSR000ELG
DNase-seq ENCSR000ELG [biosample_summary="Homo sapiens naive B cell"]
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| Id: | DNase-seq/ENCSR000ELG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELG [biosample_summary="Homo sapiens naive B cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN782UVR|/analyses/ENCAN782UVR/} has in progress subobject document {833b8d7b-5b16-468b-9c89-c8eb824810cf|/documents/833b8d7b-5b16-468b-9c89-c8eb824810cf/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF918TNU|/files/ENCFF918TNU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELG | float |
DNase-seq_ENCSR000ELG |
DNase-seq ENCSR000ELG [biosample_summary="Homo sapiens naive B cell"]
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[0.0338, 23.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF440AXZ.bed.gz | 949.2 KB | 84829ba9bc252bcb52556ca1c91f5c85 |
| ENCFF440AXZ.bed.gz.dvc | 100.0 B | e0be98aff4e864745ca67bec605b6b8b |
| ENCFF440AXZ.tabix.bed.gz | 874.73 KB | f2bce5573cad3f36b7211bd60954168e |
| ENCFF440AXZ.tabix.bed.gz.dvc | 106.0 B | a4e581e48e7d350c25e3e07641242f3e |
| ENCFF440AXZ.tabix.bed.gz.tbi | 323.74 KB | 586a6364d92dcce396a56cc203e66880 |
| ENCFF440AXZ.tabix.bed.gz.tbi.dvc | 110.0 B | 700da4682e261c6a43e3b3d2740d6faf |
| genomic_resource.yaml | 2.15 KB | aa0f850c1b8dab7e09ad989c9698b171 |
| genomic_resource_original.yaml | 2.07 KB | c8f4075061d14bdbedfa396517f75434 |
| statistics/ |