DNase-seq_ENCSR000ELD
DNase-seq ENCSR000ELD [biosample_summary="Homo sapiens epidermal melanocyte"]
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| Id: | DNase-seq/ENCSR000ELD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELD [biosample_summary="Homo sapiens epidermal melanocyte"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN614QQR|/analyses/ENCAN614QQR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF208OOF|/files/ENCFF208OOF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELD | float |
DNase-seq_ENCSR000ELD |
DNase-seq ENCSR000ELD [biosample_summary="Homo sapiens epidermal melanocyte"]
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[4, 2.14e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF075MQY.bed.gz | 1.58 MB | ef38b0bf27cdd66463ffe0c33dff1b01 |
| ENCFF075MQY.bed.gz.dvc | 101.0 B | b7c5f1c9ae8b3894fab729331171e7a1 |
| ENCFF075MQY.tabix.bed.gz | 1.34 MB | 5197e585a70488ae0e12e859e044ad52 |
| ENCFF075MQY.tabix.bed.gz.dvc | 107.0 B | cd3e8854115bfec9670baa2d6f5ad520 |
| ENCFF075MQY.tabix.bed.gz.tbi | 522.88 KB | f22986fa421390fbf7b9d53ffeef248a |
| ENCFF075MQY.tabix.bed.gz.tbi.dvc | 110.0 B | d2226cc1c60b31d2da704b775dec5e8e |
| genomic_resource.yaml | 2.13 KB | 3e291451ec6cb684847953c9932ee0fa |
| genomic_resource_original.yaml | 2.04 KB | a9111ccb152b1e7c90f588332706b908 |
| statistics/ |