DNase-seq_ENCSR000ELB
DNase-seq ENCSR000ELB [biosample_summary="Homo sapiens D341Med"]
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| Id: | DNase-seq/ENCSR000ELB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELB [biosample_summary="Homo sapiens D341Med"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN531LEL|/analyses/ENCAN531LEL/} has in progress subobject document {bbde9024-8832-43b8-bef5-f817fc3e2441|/documents/bbde9024-8832-43b8-bef5-f817fc3e2441/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF282VWA|/files/ENCFF282VWA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELB | float |
DNase-seq_ENCSR000ELB |
DNase-seq ENCSR000ELB [biosample_summary="Homo sapiens D341Med"]
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[0.0302, 317] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF677CTE.bed.gz | 1.43 MB | cb3316318c53bf100e7d1dcc8a6a96f0 |
| ENCFF677CTE.bed.gz.dvc | 101.0 B | e2336ddb12a7dc0171efdf98cededf97 |
| ENCFF677CTE.tabix.bed.gz | 1.32 MB | ef319714586807c8912614eaf517db3c |
| ENCFF677CTE.tabix.bed.gz.dvc | 107.0 B | 5125d05db6e19471ca90f2fa5c8445c3 |
| ENCFF677CTE.tabix.bed.gz.tbi | 429.72 KB | aceed1d48a93885e4a5624f25a540482 |
| ENCFF677CTE.tabix.bed.gz.tbi.dvc | 110.0 B | 648d82e445a4f3c050df69f817354283 |
| genomic_resource.yaml | 2.13 KB | 961afc8802f33f365287f7194e368b07 |
| genomic_resource_original.yaml | 2.06 KB | 1e739131d8ddeeb1c668f3610386fc44 |
| statistics/ |