DNase-seq_ENCSR000ELA
DNase-seq ENCSR000ELA [biosample_summary="Homo sapiens D721Med"]
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| Id: | DNase-seq/ENCSR000ELA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ELA [biosample_summary="Homo sapiens D721Med"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN817ULI|/analyses/ENCAN817ULI/} has in progress subobject document {93a73da9-32e2-4aea-9001-d3fc6a964b2e|/documents/93a73da9-32e2-4aea-9001-d3fc6a964b2e/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF855PPS|/files/ENCFF855PPS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ELA | float |
DNase-seq_ENCSR000ELA |
DNase-seq ENCSR000ELA [biosample_summary="Homo sapiens D721Med"]
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[0.126, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF722JSP.bed.gz | 466.42 KB | 9c33b5dba02e27da6f06f09470d67f1f |
| ENCFF722JSP.bed.gz.dvc | 100.0 B | afa360c8c4e725e66c45e7fa0d9975c2 |
| ENCFF722JSP.tabix.bed.gz | 419.69 KB | 6fdaed59e5d05bdea787b7125f47f41d |
| ENCFF722JSP.tabix.bed.gz.dvc | 106.0 B | d4758e746fcec7e6d599ebbcb2f518fc |
| ENCFF722JSP.tabix.bed.gz.tbi | 221.74 KB | 2235223ff9fc9fcf27fd7f119cd05540 |
| ENCFF722JSP.tabix.bed.gz.tbi.dvc | 110.0 B | f45da2adddff9e66f8ee63dc5d0ca1bf |
| genomic_resource.yaml | 2.13 KB | 1a127f677a64ef3164c3c277539184e5 |
| genomic_resource_original.yaml | 2.06 KB | a3b3ccbffb7185a6948ee415fb4fce86 |
| statistics/ |