DNase-seq_ENCSR000EKZ
DNase-seq ENCSR000EKZ [biosample_summary="Homo sapiens MCF-7"]
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| Id: | DNase-seq/ENCSR000EKZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKZ [biosample_summary="Homo sapiens MCF-7"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN379VEV|/analyses/ENCAN379VEV/} has in progress subobject document {d99d6ef0-ecd0-4999-9286-f62ac227f1ea|/documents/d99d6ef0-ecd0-4999-9286-f62ac227f1ea/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF408IOA|/files/ENCFF408IOA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKZ | float |
DNase-seq_ENCSR000EKZ |
DNase-seq ENCSR000EKZ [biosample_summary="Homo sapiens MCF-7"]
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[0.114, 52] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF438LQM.bed.gz | 863.64 KB | c992707622b1cc2c3d851391d6dcf169 |
| ENCFF438LQM.bed.gz.dvc | 100.0 B | 0f02a33b5d2a67cb73894adea278d831 |
| ENCFF438LQM.tabix.bed.gz | 779.78 KB | fa7cf18b3f3a943eccc8d69e5912d32d |
| ENCFF438LQM.tabix.bed.gz.dvc | 106.0 B | 7e549a8e50d8f06459fa3b7858665e68 |
| ENCFF438LQM.tabix.bed.gz.tbi | 406.28 KB | 621d18f3cf30e55579746ddb9aa1d6de |
| ENCFF438LQM.tabix.bed.gz.tbi.dvc | 110.0 B | 4b8046f48972f1344b2533eafe8cbfe3 |
| genomic_resource.yaml | 2.12 KB | db7fe5b0776eeb0e591fa569572b0c8b |
| genomic_resource_original.yaml | 2.06 KB | ccb5e66464c562d61cde9ae7a44bf8cb |
| statistics/ |