DNase-seq_ENCSR000EKV
DNase-seq ENCSR000EKV [biosample_summary="Homo sapiens MCF-7"]
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| Id: | DNase-seq/ENCSR000EKV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKV [biosample_summary="Homo sapiens MCF-7"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN487ZIT|/analyses/ENCAN487ZIT/} has in progress subobject document {b97d08b9-9a55-43de-b9d5-7a8aa2ebcb15|/documents/b97d08b9-9a55-43de-b9d5-7a8aa2ebcb15/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF180IVB|/files/ENCFF180IVB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKV | float |
DNase-seq_ENCSR000EKV |
DNase-seq ENCSR000EKV [biosample_summary="Homo sapiens MCF-7"]
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[0.0887, 106] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF522NDW.bed.gz | 1.03 MB | b78cd610c571b09278ab2fe58fd5ec90 |
| ENCFF522NDW.bed.gz.dvc | 101.0 B | ccca06029557e0e1f77640c1ee656006 |
| ENCFF522NDW.tabix.bed.gz | 967.51 KB | f32fa026fe6a2853523be2c7ef1682c1 |
| ENCFF522NDW.tabix.bed.gz.dvc | 106.0 B | 4773eee16f67a0fa583ecc8803594356 |
| ENCFF522NDW.tabix.bed.gz.tbi | 410.26 KB | 2c023f50e74e3b58fbb8069693e25a08 |
| ENCFF522NDW.tabix.bed.gz.tbi.dvc | 110.0 B | ace1ceb2365d41e4c7224d08ef0234ed |
| genomic_resource.yaml | 2.12 KB | 41e8f8b25b116bd136c6b5466d7931a3 |
| genomic_resource_original.yaml | 2.06 KB | 0a099f7e30a26a3d8f2ea8214434c972 |
| statistics/ |