DNase-seq_ENCSR000EKS
DNase-seq ENCSR000EKS [biosample_summary="Homo sapiens K562"]
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| Id: | DNase-seq/ENCSR000EKS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKS [biosample_summary="Homo sapiens K562"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN694OCK|/analyses/ENCAN694OCK/} has in progress subobject document {9674d4ce-4abb-49b5-b6b3-1eca5d0ac16f|/documents/9674d4ce-4abb-49b5-b6b3-1eca5d0ac16f/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF257HEE|/files/ENCFF257HEE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKS | float |
DNase-seq_ENCSR000EKS |
DNase-seq ENCSR000EKS [biosample_summary="Homo sapiens K562"]
|
|
[0.0253, 65.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF274YGF.bed.gz | 1.29 MB | 9262ab2b89cd60d05deb831cdd6b509e |
| ENCFF274YGF.bed.gz.dvc | 101.0 B | bdd40b611e15e8b47a6d9535a2784d09 |
| ENCFF274YGF.tabix.bed.gz | 1.19 MB | 56911d0373b6f5a308b5f9c0af874f16 |
| ENCFF274YGF.tabix.bed.gz.dvc | 107.0 B | 0856b958c91a81cafdd2d00b5ab93f37 |
| ENCFF274YGF.tabix.bed.gz.tbi | 424.63 KB | c769521b0ce76bd43224ed1f73a90498 |
| ENCFF274YGF.tabix.bed.gz.tbi.dvc | 110.0 B | 93ce24496d6a2ef105b6b9ada6756f82 |
| genomic_resource.yaml | 2.12 KB | 1cdd37182404aa71216eaf0e61b0262c |
| genomic_resource_original.yaml | 2.05 KB | bfd8e5edfbf775e01440f36c9272f8e0 |
| statistics/ |