DNase-seq_ENCSR000EKQ
DNase-seq ENCSR000EKQ [biosample_summary="Homo sapiens K562 G1 phase"]
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| Id: | DNase-seq/ENCSR000EKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKQ [biosample_summary="Homo sapiens K562 G1 phase"] |
| Description: |
status: released biological_replicates: Rep 1 summary: G1 phase output_type: peaks audit_internal_action: Released analysis {ENCAN856HRK|/analyses/ENCAN856HRK/} has in progress subobject document {687d5617-4d01-4e29-9d50-0c32f53bce71|/documents/687d5617-4d01-4e29-9d50-0c32f53bce71/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF708UMH|/files/ENCFF708UMH/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKQ | float |
DNase-seq_ENCSR000EKQ |
DNase-seq ENCSR000EKQ [biosample_summary="Homo sapiens K562 G1 phase"]
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[0.024, 42.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF628UDH.bed.gz | 1.16 MB | 7172d67947189cde5e584529f0f1048f |
| ENCFF628UDH.bed.gz.dvc | 101.0 B | 0a49711436c467509e1e3958b90ef761 |
| ENCFF628UDH.tabix.bed.gz | 1.06 MB | 1fc9c871b07e1640faeb3dfae9818279 |
| ENCFF628UDH.tabix.bed.gz.dvc | 107.0 B | 8b5ff50b9c0d890ca957162256ecca32 |
| ENCFF628UDH.tabix.bed.gz.tbi | 387.08 KB | 0750b0d6339de67c127c98d95a410d04 |
| ENCFF628UDH.tabix.bed.gz.tbi.dvc | 110.0 B | 211c5768537807e2a61f8627c35517fe |
| genomic_resource.yaml | 2.13 KB | 0d12701fb1fccce927da9569229a3600 |
| genomic_resource_original.yaml | 2.05 KB | 87c44f8114127a1adc6974b205270ab8 |
| statistics/ |