Resource
| Id | DNase-seq/ENCSR000EKP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EKP [biosample_summary="Homo sapiens K562 G2 phase"] |
| Description |
status: released biological_replicates: Rep 1 summary: G2 phase output_type: peaks audit_internal_action: Released analysis {ENCAN984DCZ|/analyses/ENCAN984DCZ/} has in progress subobject document {eac41d33-1b01-48d5-933e-a32028f4b64a|/documents/eac41d33-1b01-48d5-933e-a32028f4b64a/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF850WVL|/files/ENCFF850WVL/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKP | float |
DNase-seq_ENCSR000EKP |
DNase-seq ENCSR000EKP [biosample_summary="Homo sapiens K562 G2 phase"]
|
 |
[0.0158, 48] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19122915 | 0.59% | 101916 |
| chr1 | 2013648 | 0.81% | 10646 |
| chr2 | 1219902 | 0.50% | 6620 |
| chr3 | 1015712 | 0.51% | 5463 |
| chr4 | 636186 | 0.33% | 3488 |
| chr5 | 833084 | 0.46% | 4531 |
| chr6 | 1033652 | 0.61% | 5612 |
| chr7 | 999534 | 0.63% | 5383 |
| chr8 | 704209 | 0.49% | 3812 |
| chr9 | 822342 | 0.59% | 4388 |
| chr10 | 841269 | 0.63% | 4509 |
| chr11 | 1054107 | 0.78% | 5551 |
| chr12 | 908620 | 0.68% | 4855 |
| chr13 | 370823 | 0.32% | 1921 |
| chr14 | 541226 | 0.51% | 2865 |
| chr15 | 578245 | 0.57% | 3104 |
| chr16 | 835196 | 0.92% | 4412 |
| chr17 | 1086260 | 1.30% | 5645 |
| chr18 | 283178 | 0.35% | 1572 |
| chr19 | 1353840 | 2.31% | 6860 |
| chr20 | 582182 | 0.90% | 3100 |
| chr21 | 198022 | 0.42% | 1091 |
| chr22 | 677547 | 1.33% | 3628 |
| chrX | 532954 | 0.34% | 2849 |
| chrY | 1177 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 101916 | 1 | 940 | 187.63 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF926HBH.bed.gz | 1.11 MB | 46563c38988e7d94f1f68dcd9fc05cc0 |
| ENCFF926HBH.tabix.bed.gz | 1.02 MB | 7ae68485eb5015f846b0320f9a67e3b8 |
| ENCFF926HBH.tabix.bed.gz.tbi | 371.26 KB | 3209544124566bd8a123415c5d886f79 |
| genomic_resource.yaml | 2.13 KB | 33099c9672a59e99eed444081554bf1c |
| statistics/ |