DNase-seq_ENCSR000EKP
DNase-seq ENCSR000EKP [biosample_summary="Homo sapiens K562 G2 phase"]
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| Id: | DNase-seq/ENCSR000EKP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKP [biosample_summary="Homo sapiens K562 G2 phase"] |
| Description: |
status: released biological_replicates: Rep 1 summary: G2 phase output_type: peaks audit_internal_action: Released analysis {ENCAN984DCZ|/analyses/ENCAN984DCZ/} has in progress subobject document {eac41d33-1b01-48d5-933e-a32028f4b64a|/documents/eac41d33-1b01-48d5-933e-a32028f4b64a/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF850WVL|/files/ENCFF850WVL/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKP | float |
DNase-seq_ENCSR000EKP |
DNase-seq ENCSR000EKP [biosample_summary="Homo sapiens K562 G2 phase"]
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[0.0158, 48] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF926HBH.bed.gz | 1.11 MB | 46563c38988e7d94f1f68dcd9fc05cc0 |
| ENCFF926HBH.bed.gz.dvc | 101.0 B | b0d5c1ab3be8de7116b877996680f6d6 |
| ENCFF926HBH.tabix.bed.gz | 1.02 MB | 7ae68485eb5015f846b0320f9a67e3b8 |
| ENCFF926HBH.tabix.bed.gz.dvc | 107.0 B | 2eadf776f97def36479434858b8e3334 |
| ENCFF926HBH.tabix.bed.gz.tbi | 371.26 KB | 3209544124566bd8a123415c5d886f79 |
| ENCFF926HBH.tabix.bed.gz.tbi.dvc | 110.0 B | 35a5169bd41c70cce76e2b0240f15f90 |
| genomic_resource.yaml | 2.13 KB | 33099c9672a59e99eed444081554bf1c |
| genomic_resource_original.yaml | 2.05 KB | 2eacc145df1c9826a6a99062b3742110 |
| statistics/ |