DNase-seq_ENCSR000EKK
DNase-seq ENCSR000EKK [biosample_summary="Homo sapiens iPS-NIHi7 originated from AG08395"]
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| Id: | DNase-seq/ENCSR000EKK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKK [biosample_summary="Homo sapiens iPS-NIHi7 originated from AG08395"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF710NCT|/files/ENCFF710NCT/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN893ALP|/analyses/ENCAN893ALP/} has in progress subobject document {97e02c3b-82d2-4e29-bb5a-2ed27482f885|/documents/97e02c3b-82d2-4e29-bb5a-2ed27482f885/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKK | float |
DNase-seq_ENCSR000EKK |
DNase-seq ENCSR000EKK [biosample_summary="Homo sapiens iPS-NIHi7 originated from AG08395"]
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[0.0302, 5.87] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532ILC.bed.gz | 1.5 MB | 856ab715750552234f62f35fdbd2090c |
| ENCFF532ILC.bed.gz.dvc | 101.0 B | d08039bc6bfb53477636136de6522181 |
| ENCFF532ILC.tabix.bed.gz | 1.37 MB | 2477b54ceb0a3e660c7b63ffdd4332cf |
| ENCFF532ILC.tabix.bed.gz.dvc | 107.0 B | ff2ce52ddd0cc2e605b0fb7c456be78d |
| ENCFF532ILC.tabix.bed.gz.tbi | 525.48 KB | 5e799692f7253f96b9ca4458abdcdbf1 |
| ENCFF532ILC.tabix.bed.gz.tbi.dvc | 110.0 B | 41703a4c9c51e0034ecfd634a0ab6759 |
| genomic_resource.yaml | 2.21 KB | 923ee91d092167f6e056554e02baab6b |
| genomic_resource_original.yaml | 2.11 KB | fa9442bc92ae61970300dcdd0e2f18ab |
| statistics/ |