DNase-seq_ENCSR000EKJ
DNase-seq ENCSR000EKJ [biosample_summary="Homo sapiens iPS-NIHi11 originated from AG20443"]
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| Id: | DNase-seq/ENCSR000EKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKJ [biosample_summary="Homo sapiens iPS-NIHi11 originated from AG20443"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN508JOC|/analyses/ENCAN508JOC/} has in progress subobject document {0a338124-2b59-47bd-ab4c-3cc296efad34|/documents/0a338124-2b59-47bd-ab4c-3cc296efad34/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF012FPM|/files/ENCFF012FPM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKJ | float |
DNase-seq_ENCSR000EKJ |
DNase-seq ENCSR000EKJ [biosample_summary="Homo sapiens iPS-NIHi11 originated from AG20443"]
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[0.0335, 12.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669SYE.bed.gz | 1.5 MB | 9096b34cacfd692d5ae243bfefa5803d |
| ENCFF669SYE.bed.gz.dvc | 101.0 B | a5be20bebdcc092c74bc79eb338b6346 |
| ENCFF669SYE.tabix.bed.gz | 1.37 MB | f4dc8fd961f4819ae76858ddb924c084 |
| ENCFF669SYE.tabix.bed.gz.dvc | 107.0 B | 490d0ae02d5dbcffc76ad5c00fe3ee0b |
| ENCFF669SYE.tabix.bed.gz.tbi | 519.78 KB | af810951f59f3fbeb95271d107e71d52 |
| ENCFF669SYE.tabix.bed.gz.tbi.dvc | 110.0 B | 74dab913daa0a1959a9fd1ad8ca1c0fe |
| genomic_resource.yaml | 2.21 KB | 64ee9f4267b4ee2098172251f1c54ef9 |
| genomic_resource_original.yaml | 2.12 KB | c373b3734111494b3745738f0a03e1fb |
| statistics/ |