DNase-seq_ENCSR000EKI
DNase-seq ENCSR000EKI [biosample_summary="Homo sapiens CWRU1"]
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| Id: | DNase-seq/ENCSR000EKI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKI [biosample_summary="Homo sapiens CWRU1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN095PWN|/analyses/ENCAN095PWN/} has in progress subobject document {96da45e9-8cb8-4f47-a764-c1ff1357f0e8|/documents/96da45e9-8cb8-4f47-a764-c1ff1357f0e8/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF478MBJ|/files/ENCFF478MBJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKI | float |
DNase-seq_ENCSR000EKI |
DNase-seq ENCSR000EKI [biosample_summary="Homo sapiens CWRU1"]
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[0.0517, 11.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF540VPT.bed.gz | 1.23 MB | 2a07bb22de9334fdeb742aae9baa1866 |
| ENCFF540VPT.bed.gz.dvc | 101.0 B | 34e2a52820d0f1343e4bbfb9a86c08e6 |
| ENCFF540VPT.tabix.bed.gz | 1.13 MB | fb8308b4a519111867d434f1bee17b85 |
| ENCFF540VPT.tabix.bed.gz.dvc | 107.0 B | ade372d50884a77362df139bf2689b29 |
| ENCFF540VPT.tabix.bed.gz.tbi | 475.95 KB | eef8f41b2f96262655b8adb641cd64b0 |
| ENCFF540VPT.tabix.bed.gz.tbi.dvc | 110.0 B | 22f272aed11669e5d664307ad25c2ace |
| genomic_resource.yaml | 2.12 KB | 7d69023d6a1bff68f10ef71f95855510 |
| genomic_resource_original.yaml | 2.06 KB | 17e83797da58a38f49910e821994cc01 |
| statistics/ |