DNase-seq_ENCSR000EKG
DNase-seq ENCSR000EKG [biosample_summary="Homo sapiens IMR-90"]
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| Id: | DNase-seq/ENCSR000EKG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKG [biosample_summary="Homo sapiens IMR-90"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN408ZIC|/analyses/ENCAN408ZIC/} has in progress subobject document {672c1dad-41c7-412f-a462-698230c5c2fe|/documents/672c1dad-41c7-412f-a462-698230c5c2fe/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF530KLY|/files/ENCFF530KLY/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKG | float |
DNase-seq_ENCSR000EKG |
DNase-seq ENCSR000EKG [biosample_summary="Homo sapiens IMR-90"]
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[0.0391, 21.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF221SZF.bed.gz | 1.74 MB | 9acc7385e4f1efcca071e9e17bcd86c5 |
| ENCFF221SZF.bed.gz.dvc | 101.0 B | f9b3c2bac6805f774e3bc7dc10024b46 |
| ENCFF221SZF.tabix.bed.gz | 1.61 MB | fcfb0fa6b3ca63635305e2ba0ec7b320 |
| ENCFF221SZF.tabix.bed.gz.dvc | 107.0 B | 37b5f99b8b85806f399e6c5168d7f718 |
| ENCFF221SZF.tabix.bed.gz.tbi | 506.26 KB | 7ea5219ccd42abc0eb486e52d80b9105 |
| ENCFF221SZF.tabix.bed.gz.tbi.dvc | 110.0 B | 7652979f3ebe556c13b5f309b47d04b2 |
| genomic_resource.yaml | 2.17 KB | 92667c6e35b64965b3a704336e589b12 |
| genomic_resource_original.yaml | 2.1 KB | b9b1bfab063e13a5bcf3d6d1af579293 |
| statistics/ |