Resource

Id DNase-seq/ENCSR000EKEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EKE [biosample_summary="Homo sapiens HuH-7.5"]
Description
Labels
  • accession: ENCSR000EKE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005704/
  • biosample_summary: Homo sapiens HuH-7.5
  • date_created: 2013-12-12T07:07:40.379946+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EKE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EKE float

DNase-seq_ENCSR000EKE

DNase-seq ENCSR000EKE [biosample_summary="Homo sapiens HuH-7.5"]
HISTOGRAM FOR DNase-seq_ENCSR000EKE [0.086, 59.7]
n
13,380,537
mean
2.15
sd
2.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133805370.42% 75012
chr1 1258426 0.51% 7009
chr2 987584 0.41% 5669
chr3 825336 0.42% 4669
chr4 523265 0.28% 3053
chr5 618078 0.34% 3557
chr6 670326 0.39% 3892
chr7 712587 0.45% 4008
chr8 501159 0.35% 2900
chr9 590860 0.43% 3269
chr10 552967 0.41% 3190
chr11 756650 0.56% 4104
chr12 711236 0.53% 3938
chr13 242268 0.21% 1418
chr14 425239 0.40% 2399
chr15 507353 0.50% 2754
chr16 518202 0.57% 2857
chr17 733772 0.88% 3997
chr18 243402 0.30% 1394
chr19 834517 1.42% 4371
chr20 483632 0.75% 2625
chr21 121869 0.26% 708
chr22 316219 0.62% 1723
chrX 245496 0.16% 1507
chrY 94 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75012 2 802 178.38 176
global segment-length histogram

Files

Filename Size md5
ENCFF628BKW.bed.gz 805.81 KB f0f6b33fcd8fd2a90ede22b9593792f7
ENCFF628BKW.tabix.bed.gz 735.37 KB 4c607d5897bd1338d5f254f80dc37871
ENCFF628BKW.tabix.bed.gz.tbi 309.86 KB 1b07c383cb0b975ffb39de068959c8b3
genomic_resource.yaml 2.13 KB 4e1786728203f8f79ac47187098eb4b3
statistics/