DNase-seq_ENCSR000EKE
DNase-seq ENCSR000EKE [biosample_summary="Homo sapiens HuH-7.5"]
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| Id: | DNase-seq/ENCSR000EKE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKE [biosample_summary="Homo sapiens HuH-7.5"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN334PDP|/analyses/ENCAN334PDP/} has in progress subobject document {420fc820-d6f6-46c0-9fac-f9ad1540e634|/documents/420fc820-d6f6-46c0-9fac-f9ad1540e634/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF406BXB|/files/ENCFF406BXB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKE | float |
DNase-seq_ENCSR000EKE |
DNase-seq ENCSR000EKE [biosample_summary="Homo sapiens HuH-7.5"]
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[0.086, 59.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF628BKW.bed.gz | 805.81 KB | f0f6b33fcd8fd2a90ede22b9593792f7 |
| ENCFF628BKW.bed.gz.dvc | 100.0 B | 82826bb626257a188b76459d5bd32090 |
| ENCFF628BKW.tabix.bed.gz | 735.37 KB | 4c607d5897bd1338d5f254f80dc37871 |
| ENCFF628BKW.tabix.bed.gz.dvc | 106.0 B | b22ce3e742c9a1bd98c95b95cdd0dff4 |
| ENCFF628BKW.tabix.bed.gz.tbi | 309.86 KB | 1b07c383cb0b975ffb39de068959c8b3 |
| ENCFF628BKW.tabix.bed.gz.tbi.dvc | 110.0 B | 3b695b38c80692e3feb354b226274592 |
| genomic_resource.yaml | 2.13 KB | 4e1786728203f8f79ac47187098eb4b3 |
| genomic_resource_original.yaml | 2.06 KB | edf6d3df084dd7ff28521054a4ac3a15 |
| statistics/ |