Resource

Id DNase-seq/ENCSR000EKDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EKD [biosample_summary="Homo sapiens HuH-7"]
Description
Labels
  • accession: ENCSR000EKD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005384/
  • biosample_summary: Homo sapiens HuH-7
  • date_created: 2013-12-12T07:07:39.837618+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EKD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EKD float

DNase-seq_ENCSR000EKD

DNase-seq ENCSR000EKD [biosample_summary="Homo sapiens HuH-7"]
HISTOGRAM FOR DNase-seq_ENCSR000EKD [7, 52]
n
13,650
mean
14.7
sd
7.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 13650<0.01% 91
chr1 900 <0.01% 6
chr2 300 <0.01% 2
chr3 750 <0.01% 5
chr4 300 <0.01% 2
chr5 450 <0.01% 3
chr6 150 <0.01% 1
chr7 450 <0.01% 3
chr8 150 <0.01% 1
chr9 900 <0.01% 6
chr10 150 <0.01% 1
chr11 750 <0.01% 5
chr12 750 <0.01% 5
chr13 150 <0.01% 1
chr14 150 <0.01% 1
chr15 450 <0.01% 3
chr16 1500 <0.01% 10
chr17 1350 <0.01% 9
chr19 2400 <0.01% 16
chr20 1350 <0.01% 9
chr22 300 <0.01% 2
3346 contigs with no values (469428663 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91 150 150 150 150
global segment-length histogram

Files

Filename Size md5
ENCFF220TWO.bed.gz 1.08 KB 57e4b8833477128a2b6f270b07c6ac66
ENCFF220TWO.tabix.bed.gz 917.0 B e43df58f3b68463c5679847c686e1f35
ENCFF220TWO.tabix.bed.gz.tbi 3.96 KB 9362b6d804f3fcfe10f394f5243da5a9
genomic_resource.yaml 2.7 KB c370c806af078c1e0fb083673c5be80f
statistics/