DNase-seq_ENCSR000EKC
DNase-seq ENCSR000EKC [biosample_summary="Homo sapiens HTR-8/SVneo"]
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| Id: | DNase-seq/ENCSR000EKC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EKC [biosample_summary="Homo sapiens HTR-8/SVneo"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN833TFC|/analyses/ENCAN833TFC/} has in progress subobject document {5e8e80bb-a078-4eb4-9707-36659d5037e9|/documents/5e8e80bb-a078-4eb4-9707-36659d5037e9/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF656TNN|/files/ENCFF656TNN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EKC | float |
DNase-seq_ENCSR000EKC |
DNase-seq ENCSR000EKC [biosample_summary="Homo sapiens HTR-8/SVneo"]
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[0.0988, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF499NJC.bed.gz | 972.22 KB | 13e77142201d56058c8bc67ca40e4dd4 |
| ENCFF499NJC.bed.gz.dvc | 100.0 B | db395dfbc997e1866ed73152e6d40f2f |
| ENCFF499NJC.tabix.bed.gz | 881.95 KB | 81b81331338200f788ebdc6c43530810 |
| ENCFF499NJC.tabix.bed.gz.dvc | 106.0 B | 59fd96858278eef9994a292fb99e7a95 |
| ENCFF499NJC.tabix.bed.gz.tbi | 419.02 KB | a77a74ebcb76ea42dc9a2b5a51f47578 |
| ENCFF499NJC.tabix.bed.gz.tbi.dvc | 110.0 B | 9d59f1a38c9cbb1991b92b0922dcf81e |
| genomic_resource.yaml | 2.14 KB | e0e0823e00a7e22aa00c8dcf819fb825 |
| genomic_resource_original.yaml | 2.07 KB | 2b975554d746eb82134f698b2597bb74 |
| statistics/ |