DNase-seq_ENCSR000EJX
DNase-seq ENCSR000EJX [biosample_summary="Homo sapiens HPDE6-E6E7"]
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| Id: | DNase-seq/ENCSR000EJX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJX [biosample_summary="Homo sapiens HPDE6-E6E7"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF908JAN|/files/ENCFF908JAN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.21. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN448GGM|/analyses/ENCAN448GGM/} has in progress subobject document {6219c330-069c-401f-90f7-8d67307f3f23|/documents/6219c330-069c-401f-90f7-8d67307f3f23/} audit_warning: Replicate 1_2 has no significant footprints detected. audit_warning: Replicate 1_1 has no significant footprints detected. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJX | float |
DNase-seq_ENCSR000EJX |
DNase-seq ENCSR000EJX [biosample_summary="Homo sapiens HPDE6-E6E7"]
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[0.102, 8.18] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF062RTM.bed.gz | 965.57 KB | 7a5c73348cf8b7e9bb667fe744c2b588 |
| ENCFF062RTM.bed.gz.dvc | 100.0 B | ddb0fa337e0c487aac9647d94d1998eb |
| ENCFF062RTM.tabix.bed.gz | 873.63 KB | 91bb6999b43e07e98431910d1e659f22 |
| ENCFF062RTM.tabix.bed.gz.dvc | 106.0 B | b658940e88818d9d3fb5abb5b2128fa4 |
| ENCFF062RTM.tabix.bed.gz.tbi | 427.17 KB | 31c17f468d64f0ac4a0c7f855246495f |
| ENCFF062RTM.tabix.bed.gz.tbi.dvc | 110.0 B | 5b26fc708fae0f378f8cd0f3f9455dcb |
| genomic_resource.yaml | 2.31 KB | 0dd07a1e0b99765b228167553e3f5d63 |
| genomic_resource_original.yaml | 2.23 KB | b229e2a8a4a2172b948418ac289c624c |
| statistics/ |