DNase-seq_ENCSR000EJV
DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"]
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| Id: | DNase-seq/ENCSR000EJV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN582ZRO|/analyses/ENCAN582ZRO/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF730LDQ|/files/ENCFF730LDQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45503051 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJV | float |
DNase-seq_ENCSR000EJV |
DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"]
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[3, 815] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF341XEM.bed.gz | 873.11 KB | 2b7d8ced35b2e2479cc6ec5d3a54eb3f |
| ENCFF341XEM.bed.gz.dvc | 100.0 B | a62cc18dddbb25bbc2156397e0e012a6 |
| ENCFF341XEM.tabix.bed.gz | 748.5 KB | 628f6fde63a64c0faac14df98e9344be |
| ENCFF341XEM.tabix.bed.gz.dvc | 106.0 B | 4711a0c806b9d94612131ff47f37991d |
| ENCFF341XEM.tabix.bed.gz.tbi | 400.16 KB | 4f309b6ece448123ea0fe39793182257 |
| ENCFF341XEM.tabix.bed.gz.tbi.dvc | 110.0 B | 25c94b6e0443e7d827866f20b8ac55e6 |
| genomic_resource.yaml | 1.88 KB | 3d73f5708b90ac3f119565bab8e2ffd0 |
| genomic_resource_original.yaml | 1.81 KB | 7968d9d4c2022503d88efc90bf2444b3 |
| statistics/ |