Resource

Id DNase-seq/ENCSR000EJVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"]
Description
Labels
  • accession: ENCSR000EJV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2014-01-30T18:55:00.261783+00:00
  • date_released: 2012-03-28
  • doi: 10.17989/ENCSR000EJV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJV float

DNase-seq_ENCSR000EJV

DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"]
HISTOGRAM FOR DNase-seq_ENCSR000EJV [3, 815]
n
13,417,035
mean
72.3
sd
67.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 134170350.42% 89310
chr1 1229501 0.49% 8178
chr2 1167971 0.48% 7778
chr3 798229 0.40% 5310
chr4 543274 0.29% 3619
chr5 661480 0.36% 4398
chr6 808249 0.47% 5380
chr7 644496 0.40% 4294
chr8 541905 0.37% 3607
chr9 573408 0.41% 3821
chr10 613459 0.46% 4084
chr11 660479 0.49% 4396
chr12 630061 0.47% 4192
chr13 288679 0.25% 1922
chr14 459979 0.43% 3058
chr15 429000 0.42% 2856
chr16 545555 0.60% 3637
chr17 723168 0.87% 4814
chr18 287644 0.36% 1915
chr19 546044 0.93% 3635
chr20 508366 0.79% 3385
chr21 140400 0.30% 934
chr22 272205 0.54% 1813
chrX 330133 0.21% 2195
chrY 13350 0.02% 89
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89310 29 442 150.23 150
global segment-length histogram

Files

Filename Size md5
ENCFF341XEM.bed.gz 873.11 KB 2b7d8ced35b2e2479cc6ec5d3a54eb3f
ENCFF341XEM.tabix.bed.gz 748.5 KB 628f6fde63a64c0faac14df98e9344be
ENCFF341XEM.tabix.bed.gz.tbi 400.16 KB 4f309b6ece448123ea0fe39793182257
genomic_resource.yaml 1.88 KB 3d73f5708b90ac3f119565bab8e2ffd0
statistics/