Resource
| Id | DNase-seq/ENCSR000EJV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN582ZRO|/analyses/ENCAN582ZRO/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF730LDQ|/files/ENCFF730LDQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45503051 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJV | float |
DNase-seq_ENCSR000EJV |
DNase-seq ENCSR000EJV [biosample_summary="Homo sapiens HepG2"]
|
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[3, 815] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13417035 | 0.42% | 89310 |
| chr1 | 1229501 | 0.49% | 8178 |
| chr2 | 1167971 | 0.48% | 7778 |
| chr3 | 798229 | 0.40% | 5310 |
| chr4 | 543274 | 0.29% | 3619 |
| chr5 | 661480 | 0.36% | 4398 |
| chr6 | 808249 | 0.47% | 5380 |
| chr7 | 644496 | 0.40% | 4294 |
| chr8 | 541905 | 0.37% | 3607 |
| chr9 | 573408 | 0.41% | 3821 |
| chr10 | 613459 | 0.46% | 4084 |
| chr11 | 660479 | 0.49% | 4396 |
| chr12 | 630061 | 0.47% | 4192 |
| chr13 | 288679 | 0.25% | 1922 |
| chr14 | 459979 | 0.43% | 3058 |
| chr15 | 429000 | 0.42% | 2856 |
| chr16 | 545555 | 0.60% | 3637 |
| chr17 | 723168 | 0.87% | 4814 |
| chr18 | 287644 | 0.36% | 1915 |
| chr19 | 546044 | 0.93% | 3635 |
| chr20 | 508366 | 0.79% | 3385 |
| chr21 | 140400 | 0.30% | 934 |
| chr22 | 272205 | 0.54% | 1813 |
| chrX | 330133 | 0.21% | 2195 |
| chrY | 13350 | 0.02% | 89 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89310 | 29 | 442 | 150.23 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF341XEM.bed.gz | 873.11 KB | 2b7d8ced35b2e2479cc6ec5d3a54eb3f |
| ENCFF341XEM.tabix.bed.gz | 748.5 KB | 628f6fde63a64c0faac14df98e9344be |
| ENCFF341XEM.tabix.bed.gz.tbi | 400.16 KB | 4f309b6ece448123ea0fe39793182257 |
| genomic_resource.yaml | 1.88 KB | 3d73f5708b90ac3f119565bab8e2ffd0 |
| statistics/ |
