Resource

Id DNase-seq/ENCSR000EJUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJU [biosample_summary="Homo sapiens hepatocyte"]
Description
Labels
  • accession: ENCSR000EJU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000182/
  • biosample_summary: Homo sapiens hepatocyte
  • date_created: 2014-01-30T18:55:02.207899+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EJU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJU float

DNase-seq_ENCSR000EJU

DNase-seq ENCSR000EJU [biosample_summary="Homo sapiens hepatocyte"]
HISTOGRAM FOR DNase-seq_ENCSR000EJU [0.0859, 13.6]
n
4,687,458
mean
1.4
sd
1.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 46874580.15% 29073
chr1 430629 0.17% 2713
chr2 358301 0.15% 2174
chr3 245365 0.12% 1550
chr4 218152 0.11% 1311
chr5 209245 0.12% 1322
chr6 242745 0.14% 1524
chr7 247448 0.16% 1512
chr8 206484 0.14% 1248
chr9 211481 0.15% 1312
chr10 212237 0.16% 1341
chr11 279438 0.21% 1734
chr12 211487 0.16% 1321
chr13 98418 0.09% 611
chr14 143720 0.13% 881
chr15 138181 0.14% 895
chr16 203136 0.22% 1241
chr17 271550 0.33% 1676
chr18 86840 0.11% 557
chr19 323390 0.55% 1908
chr20 120737 0.19% 753
chr21 44897 0.10% 298
chr22 119296 0.23% 760
chrX 64281 0.04% 431
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29073 3 1260 161.23 158
global segment-length histogram

Files

Filename Size md5
ENCFF089ZNM.bed.gz 310.31 KB 495289e49eac87c42ad3809b24fd25ce
ENCFF089ZNM.tabix.bed.gz 281.13 KB 82091278b228856f6f2678f220d2e952
ENCFF089ZNM.tabix.bed.gz.tbi 135.29 KB a9b4ec0b9c30733e8d4cf38beff6bc0f
genomic_resource.yaml 2.14 KB cb18f3978530bc321ee0630841ec94f7
statistics/