DNase-seq_ENCSR000EJU
DNase-seq ENCSR000EJU [biosample_summary="Homo sapiens hepatocyte"]
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| Id: | DNase-seq/ENCSR000EJU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJU [biosample_summary="Homo sapiens hepatocyte"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN161DFM|/analyses/ENCAN161DFM/} has in progress subobject document {2bd0f338-3b61-4111-81b9-d73beb3927bc|/documents/2bd0f338-3b61-4111-81b9-d73beb3927bc/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF345EXO|/files/ENCFF345EXO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJU | float |
DNase-seq_ENCSR000EJU |
DNase-seq ENCSR000EJU [biosample_summary="Homo sapiens hepatocyte"]
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[0.0859, 13.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF089ZNM.bed.gz | 310.31 KB | 495289e49eac87c42ad3809b24fd25ce |
| ENCFF089ZNM.bed.gz.dvc | 100.0 B | 343216c030c0157b277bd2777f5b963f |
| ENCFF089ZNM.tabix.bed.gz | 281.13 KB | 82091278b228856f6f2678f220d2e952 |
| ENCFF089ZNM.tabix.bed.gz.dvc | 106.0 B | e6fb48919053b2f619a130041dc8335f |
| ENCFF089ZNM.tabix.bed.gz.tbi | 135.29 KB | a9b4ec0b9c30733e8d4cf38beff6bc0f |
| ENCFF089ZNM.tabix.bed.gz.tbi.dvc | 110.0 B | 6c058857893cfbb21be5aa078571d208 |
| genomic_resource.yaml | 2.14 KB | cb18f3978530bc321ee0630841ec94f7 |
| genomic_resource_original.yaml | 2.07 KB | 9dc3d2c04881af7b59ba2354273911bc |
| statistics/ |