DNase-seq_ENCSR000EJR
DNase-seq ENCSR000EJR [biosample_summary="Homo sapiens HEK293T"]
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| Id: | DNase-seq/ENCSR000EJR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJR [biosample_summary="Homo sapiens HEK293T"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF969MBJ|/files/ENCFF969MBJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN737CVW|/analyses/ENCAN737CVW/} has in progress subobject document {c041c2b5-8aa3-4add-a439-01c3ce241055|/documents/c041c2b5-8aa3-4add-a439-01c3ce241055/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJR | float |
DNase-seq_ENCSR000EJR |
DNase-seq ENCSR000EJR [biosample_summary="Homo sapiens HEK293T"]
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[0.0347, 11] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF285OXK.bed.gz | 929.49 KB | e6b62f6119f80acae548c7403f5f5176 |
| ENCFF285OXK.bed.gz.dvc | 100.0 B | d9c66a62c5caffa6b18738ce216bea02 |
| ENCFF285OXK.tabix.bed.gz | 861.36 KB | f09c9b12c3334d392e056ff54f9e2aa5 |
| ENCFF285OXK.tabix.bed.gz.dvc | 106.0 B | d35842937cde59c52e9e9999ea8c522c |
| ENCFF285OXK.tabix.bed.gz.tbi | 376.86 KB | be9d35f7eccaad3b0ffc930f746c6b51 |
| ENCFF285OXK.tabix.bed.gz.tbi.dvc | 110.0 B | 7ae12e935de4d4c619ebf7f5979baa71 |
| genomic_resource.yaml | 2.13 KB | 3262a11cb366d9a8f3ba44fd8567acf3 |
| genomic_resource_original.yaml | 2.06 KB | d10d94701b9ff5d179a4fd091b082fd6 |
| statistics/ |