DNase-seq_ENCSR000EJQ
DNase-seq ENCSR000EJQ [biosample_summary="Homo sapiens heart tissue male adult (27 years) and male adult (35 years)"]
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| Id: | DNase-seq/ENCSR000EJQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJQ [biosample_summary="Homo sapiens heart tissue male adult (27 years) and male adult (35 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN709MWN|/analyses/ENCAN709MWN/} has in progress subobject document {e9562bd6-4712-4a17-ae3c-1f82216f99ec|/documents/e9562bd6-4712-4a17-ae3c-1f82216f99ec/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF916MAS|/files/ENCFF916MAS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF933GFX|/files/ENCFF933GFX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJQ | float |
DNase-seq_ENCSR000EJQ |
DNase-seq ENCSR000EJQ [biosample_summary="Homo sapiens heart tissue male adult (27 years) and male adult (35 years)"]
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[0.0676, 44.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF326DYD.bed.gz | 669.83 KB | b6fb99bee2b21d4fb1fc0eed8e4886d8 |
| ENCFF326DYD.bed.gz.dvc | 100.0 B | f8007ed1a9d1a15177aeda0bf5f9e3c4 |
| ENCFF326DYD.tabix.bed.gz | 609.17 KB | 83143f0277ab64b0b521f442c3ed3900 |
| ENCFF326DYD.tabix.bed.gz.dvc | 106.0 B | f17637e237fb2e87e393496142540d1b |
| ENCFF326DYD.tabix.bed.gz.tbi | 269.04 KB | 5e78e75b609cafd6ca733bc2edcc1c15 |
| ENCFF326DYD.tabix.bed.gz.tbi.dvc | 110.0 B | eb572a41d3ed23fcfdac96532149156b |
| genomic_resource.yaml | 3.16 KB | 983dcf721967f6dc642bdf9ba6ad8ce1 |
| genomic_resource_original.yaml | 3.04 KB | 10f5266e503528c5f812da8b4e7fcf15 |
| statistics/ |