DNase-seq_ENCSR000EJP
DNase-seq ENCSR000EJP [biosample_summary="Homo sapiens H9"]
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| Id: | DNase-seq/ENCSR000EJP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJP [biosample_summary="Homo sapiens H9"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF794AMX|/files/ENCFF794AMX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN242XRV|/analyses/ENCAN242XRV/} has in progress subobject document {1878966f-2d6e-4dca-8d1f-f4fcfde5a111|/documents/1878966f-2d6e-4dca-8d1f-f4fcfde5a111/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJP | float |
DNase-seq_ENCSR000EJP |
DNase-seq ENCSR000EJP [biosample_summary="Homo sapiens H9"]
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[0.174, 8.36] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF077FEP.bed.gz | 650.42 KB | 36dd244f88bde5a1e2eecc97ac5e6815 |
| ENCFF077FEP.bed.gz.dvc | 100.0 B | 4d6094a72089ea4b687e0459815aef1d |
| ENCFF077FEP.tabix.bed.gz | 580.12 KB | bd2c62c4adf0ae5f898416d77c2eec92 |
| ENCFF077FEP.tabix.bed.gz.dvc | 106.0 B | f9ea9642cce3b4775b98978de69f8e31 |
| ENCFF077FEP.tabix.bed.gz.tbi | 337.86 KB | 4ad107c2d8d0740e7cdcde5ff6042097 |
| ENCFF077FEP.tabix.bed.gz.tbi.dvc | 110.0 B | 78221a105d3857ccfb71309286f4cc16 |
| genomic_resource.yaml | 2.11 KB | 9653e65d4a308b8099a9cf1f5571e00a |
| genomic_resource_original.yaml | 2.05 KB | 5783b97e03750f26c9b2636b6a70593a |
| statistics/ |