DNase-seq_ENCSR000EJM
DNase-seq ENCSR000EJM [biosample_summary="Homo sapiens GM20000"]
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| Id: | DNase-seq/ENCSR000EJM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJM [biosample_summary="Homo sapiens GM20000"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN189JVL|/analyses/ENCAN189JVL/} has in progress subobject document {0b72815f-944d-4960-bc00-2ab6c0d4ee6d|/documents/0b72815f-944d-4960-bc00-2ab6c0d4ee6d/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF570RLS|/files/ENCFF570RLS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJM | float |
DNase-seq_ENCSR000EJM |
DNase-seq ENCSR000EJM [biosample_summary="Homo sapiens GM20000"]
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[0.0432, 20.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF431DCA.bed.gz | 1.17 MB | 315d24862807a4b76e5e5c08f7ba8048 |
| ENCFF431DCA.bed.gz.dvc | 101.0 B | bbcbb76d4843050ac4f5e23225a2ec08 |
| ENCFF431DCA.tabix.bed.gz | 1.08 MB | c26364e6e87da5cf71892f941aaca5f6 |
| ENCFF431DCA.tabix.bed.gz.dvc | 107.0 B | 3566298bd445b4200680ad1a54c8f540 |
| ENCFF431DCA.tabix.bed.gz.tbi | 392.94 KB | a6c9c4f5d3cf76443dc7370902ba77a8 |
| ENCFF431DCA.tabix.bed.gz.tbi.dvc | 110.0 B | a813de7885ae3bf49e81a7cba9365323 |
| genomic_resource.yaml | 2.17 KB | b61909d98d8aaa99e94f1e4d6bbc4141 |
| genomic_resource_original.yaml | 2.1 KB | 9b1d8779cbc70cc563c1fed2a8afe3e8 |
| statistics/ |