Resource

Id DNase-seq/ENCSR000EJLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJL [biosample_summary="Homo sapiens GM19240"]
Description
Labels
  • accession: ENCSR000EJL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002790/
  • biosample_summary: Homo sapiens GM19240
  • date_created: 2013-12-12T07:07:28.741004+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EJL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJL float

DNase-seq_ENCSR000EJL
DNase-seq ENCSR000EJL [biosample_summary="Homo sapiens GM19240"]
 HISTOGRAM FOR DNase-seq_ENCSR000EJL [7, 1.24e+03]
n
11,356,229
mean
85.6
sd
79.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 113562290.35% 75558
chr1 1073191 0.43% 7146
chr2 806226 0.33% 5363
chr3 666999 0.34% 4432
chr4 443048 0.23% 2948
chr5 526960 0.29% 3509
chr6 631289 0.37% 4205
chr7 546207 0.34% 3640
chr8 490183 0.34% 3264
chr9 503136 0.36% 3348
chr10 496973 0.37% 3311
chr11 597250 0.44% 3973
chr12 555746 0.42% 3702
chr13 229251 0.20% 1527
chr14 353747 0.33% 2351
chr15 347070 0.34% 2314
chr16 467400 0.52% 3110
chr17 616380 0.74% 4091
chr18 210358 0.26% 1401
chr19 761255 1.30% 5051
chr20 324833 0.50% 2163
chr21 119002 0.25% 790
chr22 288226 0.57% 1918
chrX 301199 0.19% 1999
chrY 300 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75558 5 450 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF847DTY.bed.gz 744.02 KB 0ffb4fc416fda1889980a8655232ec73
ENCFF847DTY.tabix.bed.gz 635.17 KB 0a4f67efa65f880984b3ddc338532aba
ENCFF847DTY.tabix.bed.gz.tbi 323.44 KB f284ca6c8b6e2ab70cb01e82c4511404
genomic_resource.yaml 1.26 KB 5923bae17f29ad2efbbeb6e953c6a388
statistics/