DNase-seq_ENCSR000EJK
DNase-seq ENCSR000EJK [biosample_summary="Homo sapiens GM19239"]
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| Id: | DNase-seq/ENCSR000EJK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJK [biosample_summary="Homo sapiens GM19239"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN834TCD|/analyses/ENCAN834TCD/} has in progress subobject document {0e4f8198-1d17-4f77-8c62-1b853bb43098|/documents/0e4f8198-1d17-4f77-8c62-1b853bb43098/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF898IKW|/files/ENCFF898IKW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJK | float |
DNase-seq_ENCSR000EJK |
DNase-seq ENCSR000EJK [biosample_summary="Homo sapiens GM19239"]
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[0.153, 17.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF801NEP.bed.gz | 547.51 KB | e12b023d43d9152e385a44b894e085da |
| ENCFF801NEP.bed.gz.dvc | 100.0 B | 420891e0f6dc10322f6471a3dd6f735b |
| ENCFF801NEP.tabix.bed.gz | 495.42 KB | d607426669474fd2d62dd1e00fb91d52 |
| ENCFF801NEP.tabix.bed.gz.dvc | 106.0 B | dd29f3786909b26a01e68bfe8137b52e |
| ENCFF801NEP.tabix.bed.gz.tbi | 265.2 KB | 8371a1081acb0e1030457069c8451f46 |
| ENCFF801NEP.tabix.bed.gz.tbi.dvc | 110.0 B | f392638d80342bcdf6950cf402899de6 |
| genomic_resource.yaml | 2.13 KB | 49d49ac02544c18e6e7d23cd4a6c8a49 |
| genomic_resource_original.yaml | 2.06 KB | 6a9b4f76ea8cd6eeece958b05589ac89 |
| statistics/ |