DNase-seq_ENCSR000EJJ
DNase-seq ENCSR000EJJ [biosample_summary="Homo sapiens GM19238"]
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| Id: | DNase-seq/ENCSR000EJJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJJ [biosample_summary="Homo sapiens GM19238"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN229RLD|/analyses/ENCAN229RLD/} has in progress subobject document {38444c70-5666-40d2-af67-8eed484d4b8c|/documents/38444c70-5666-40d2-af67-8eed484d4b8c/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF153GQF|/files/ENCFF153GQF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJJ | float |
DNase-seq_ENCSR000EJJ |
DNase-seq ENCSR000EJJ [biosample_summary="Homo sapiens GM19238"]
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[0.15, 27] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF013CYL.bed.gz | 578.77 KB | 2d2caf1ff05a74aaf3696511c25907af |
| ENCFF013CYL.bed.gz.dvc | 100.0 B | befb02a2788f997706be6d7d85b666b5 |
| ENCFF013CYL.tabix.bed.gz | 524.46 KB | 5cf2ceb7b278985b7ae80b351f2a02cd |
| ENCFF013CYL.tabix.bed.gz.dvc | 106.0 B | 010e5a06b41fa38b98751f9fa4e2a34f |
| ENCFF013CYL.tabix.bed.gz.tbi | 259.08 KB | 40c6d1ea29c1a81c385d93874be8e968 |
| ENCFF013CYL.tabix.bed.gz.tbi.dvc | 110.0 B | a2d5ea4414f349224c395d5fd642d345 |
| genomic_resource.yaml | 2.13 KB | 8f6a0a9f535847fea6ae192fb08b30b4 |
| genomic_resource_original.yaml | 2.06 KB | a36f31c8413dfc5543b9f49e6db7fcdc |
| statistics/ |