DNase-seq_ENCSR000EJI
DNase-seq ENCSR000EJI [biosample_summary="Homo sapiens GM18507"]
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| Id: | DNase-seq/ENCSR000EJI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJI [biosample_summary="Homo sapiens GM18507"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF804MVE|/files/ENCFF804MVE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN750IRT|/analyses/ENCAN750IRT/} has in progress subobject document {0c03826d-e284-4042-9a14-70f8d870efc5|/documents/0c03826d-e284-4042-9a14-70f8d870efc5/} audit_warning: Alignment file {ENCFF804MVE|/files/ENCFF804MVE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39642445 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJI | float |
DNase-seq_ENCSR000EJI |
DNase-seq ENCSR000EJI [biosample_summary="Homo sapiens GM18507"]
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[0.232, 12.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF587IIJ.bed.gz | 422.74 KB | 9c70e429bb289ac189270ff6f4b30aef |
| ENCFF587IIJ.bed.gz.dvc | 100.0 B | 6f782e32eb099f61b5912b8759b1656f |
| ENCFF587IIJ.tabix.bed.gz | 378.75 KB | 4c1309ac178dc6b4495a10eed1f0f95c |
| ENCFF587IIJ.tabix.bed.gz.dvc | 106.0 B | 974dc6d83ce8b7a9d2963bc08e5467ec |
| ENCFF587IIJ.tabix.bed.gz.tbi | 233.54 KB | fb8ef56444b7e9e00c92766f399ec15b |
| ENCFF587IIJ.tabix.bed.gz.tbi.dvc | 110.0 B | 92ad679bb801fd56a3cbb69a0ffc9a1b |
| genomic_resource.yaml | 2.76 KB | fd5cac8541e44d20cf1d07c272f418f1 |
| genomic_resource_original.yaml | 2.69 KB | 6f9ed8d45699b8417a2e7e2e04d11cd3 |
| statistics/ |