DNase-seq_ENCSR000EJH
DNase-seq ENCSR000EJH [biosample_summary="Homo sapiens GM13977"]
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| Id: | DNase-seq/ENCSR000EJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJH [biosample_summary="Homo sapiens GM13977"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN986TJO|/analyses/ENCAN986TJO/} has in progress subobject document {350deab8-64ea-480b-90a6-127fabfd325f|/documents/350deab8-64ea-480b-90a6-127fabfd325f/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF965BFK|/files/ENCFF965BFK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJH | float |
DNase-seq_ENCSR000EJH |
DNase-seq ENCSR000EJH [biosample_summary="Homo sapiens GM13977"]
|
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[0.0173, 17.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF155GXQ.bed.gz | 1.14 MB | fe8845a8a0c8803865044a5f1ba87fc8 |
| ENCFF155GXQ.bed.gz.dvc | 101.0 B | 6a7038a500f7174ba5256572dfee5004 |
| ENCFF155GXQ.tabix.bed.gz | 1.05 MB | 1a5c9c02682c4043294853b77bfb27c4 |
| ENCFF155GXQ.tabix.bed.gz.dvc | 107.0 B | b848aa7f94d72c50734f30ac13e9e144 |
| ENCFF155GXQ.tabix.bed.gz.tbi | 382.26 KB | 4629e98ae99d3efeb78124bb4f859139 |
| ENCFF155GXQ.tabix.bed.gz.tbi.dvc | 110.0 B | d440be4a932b13f1caa69fee3acf1b86 |
| genomic_resource.yaml | 2.17 KB | 084e40691f346cb2e5711dc55a974ec2 |
| genomic_resource_original.yaml | 2.1 KB | 0a6bc092a5cc408c11e2e5f047063e13 |
| statistics/ |