Resource

Id DNase-seq/ENCSR000EJHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJH [biosample_summary="Homo sapiens GM13977"]
Description
Labels
  • accession: ENCSR000EJH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005346/
  • biosample_summary: Homo sapiens GM13977
  • date_created: 2013-12-12T07:07:26.133145+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EJH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: The data quality is too poor for processing.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJH float

DNase-seq_ENCSR000EJH

DNase-seq ENCSR000EJH [biosample_summary="Homo sapiens GM13977"]
HISTOGRAM FOR DNase-seq_ENCSR000EJH [0.0173, 17.9]
n
20,680,728
mean
1.15
sd
1.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206807280.64% 107522
chr1 1958496 0.79% 10041
chr2 1584540 0.65% 8241
chr3 1167044 0.59% 6215
chr4 894432 0.47% 4650
chr5 1014787 0.56% 5312
chr6 1174314 0.69% 6092
chr7 1017747 0.64% 5315
chr8 915269 0.63% 4770
chr9 861369 0.62% 4515
chr10 958784 0.72% 4994
chr11 1123964 0.83% 5766
chr12 1038643 0.78% 5420
chr13 440180 0.38% 2327
chr14 713815 0.67% 3688
chr15 697398 0.68% 3633
chr16 741755 0.82% 3841
chr17 1083705 1.30% 5554
chr18 392541 0.49% 2065
chr19 1110597 1.89% 5674
chr20 558624 0.87% 2919
chr21 219103 0.47% 1143
chr22 474881 0.93% 2481
chrX 538009 0.34% 2859
chrY 731 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107522 1 1240 192.34 180
global segment-length histogram

Files

Filename Size md5
ENCFF155GXQ.bed.gz 1.14 MB fe8845a8a0c8803865044a5f1ba87fc8
ENCFF155GXQ.tabix.bed.gz 1.05 MB 1a5c9c02682c4043294853b77bfb27c4
ENCFF155GXQ.tabix.bed.gz.tbi 382.26 KB 4629e98ae99d3efeb78124bb4f859139
genomic_resource.yaml 2.17 KB 084e40691f346cb2e5711dc55a974ec2
statistics/