DNase-seq_ENCSR000EJG
DNase-seq ENCSR000EJG [biosample_summary="Homo sapiens GM13976"]
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| Id: | DNase-seq/ENCSR000EJG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJG [biosample_summary="Homo sapiens GM13976"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN516COV|/analyses/ENCAN516COV/} has in progress subobject document {feeb6fd6-c467-4386-ae9a-06daa9ec536d|/documents/feeb6fd6-c467-4386-ae9a-06daa9ec536d/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF347ZRX|/files/ENCFF347ZRX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJG | float |
DNase-seq_ENCSR000EJG |
DNase-seq ENCSR000EJG [biosample_summary="Homo sapiens GM13976"]
|
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[0.0281, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF535JRP.bed.gz | 1.2 MB | 8dcf559022fa2dbf549e4afa8bd8446b |
| ENCFF535JRP.bed.gz.dvc | 101.0 B | 2e0f830f8a0fae3fee6ac02b491e60f7 |
| ENCFF535JRP.tabix.bed.gz | 1.12 MB | 329bda24fd522f384dfc7f8d947e45ed |
| ENCFF535JRP.tabix.bed.gz.dvc | 107.0 B | 513df4e85ee03aafa8b8c26d23b6c03e |
| ENCFF535JRP.tabix.bed.gz.tbi | 386.46 KB | 090959bbd2066abde65dbce96af11146 |
| ENCFF535JRP.tabix.bed.gz.tbi.dvc | 110.0 B | 2675a831f23c104f9e884d2c42be80fb |
| genomic_resource.yaml | 2.17 KB | ef1e3656e5923754745bb71e43a8480c |
| genomic_resource_original.yaml | 2.1 KB | c58d70d1b01bc8ca0ccb4b4553f2116c |
| statistics/ |