DNase-seq_ENCSR000EJE
DNase-seq ENCSR000EJE [biosample_summary="Homo sapiens GM12891"]
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| Id: | DNase-seq/ENCSR000EJE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJE [biosample_summary="Homo sapiens GM12891"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN495IXS|/analyses/ENCAN495IXS/} has in progress subobject document {b4faa0d4-9879-478f-818e-cce138464433|/documents/b4faa0d4-9879-478f-818e-cce138464433/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF851MCJ|/files/ENCFF851MCJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJE | float |
DNase-seq_ENCSR000EJE |
DNase-seq ENCSR000EJE [biosample_summary="Homo sapiens GM12891"]
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[0.137, 20.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF087IIE.bed.gz | 551.86 KB | 1b9f4c76eded2b15f6f7db92bb46be02 |
| ENCFF087IIE.bed.gz.dvc | 100.0 B | f66ccb2ebe61298a6bf831be75faccaa |
| ENCFF087IIE.tabix.bed.gz | 501.65 KB | 675917ead88373977b9cfacdb130efd5 |
| ENCFF087IIE.tabix.bed.gz.dvc | 106.0 B | 5c6e9f57b34d760759bbe0ec6e9fa745 |
| ENCFF087IIE.tabix.bed.gz.tbi | 251.53 KB | a77c6d59bbd83ddd9f2c332309b9714e |
| ENCFF087IIE.tabix.bed.gz.tbi.dvc | 110.0 B | 41c370df3b0799f5500790b10737ef16 |
| genomic_resource.yaml | 2.13 KB | 9f4c13fe6bb6d4c00c59dc9db7a45e1a |
| genomic_resource_original.yaml | 2.06 KB | 35103ec2a79e7785b07d90fc9a6fa7ef |
| statistics/ |