Resource

Id DNase-seq/ENCSR000EJEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJE [biosample_summary="Homo sapiens GM12891"]
Description
Labels
  • accession: ENCSR000EJE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002785/
  • biosample_summary: Homo sapiens GM12891
  • date_created: 2014-01-30T18:54:40.999653+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EJE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJE float

DNase-seq_ENCSR000EJE

DNase-seq ENCSR000EJE [biosample_summary="Homo sapiens GM12891"]
HISTOGRAM FOR DNase-seq_ENCSR000EJE [0.137, 20.5]
n
9,496,991
mean
2.31
sd
1.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 94969910.30% 51787
chr1 909403 0.37% 4956
chr2 674175 0.28% 3680
chr3 540892 0.27% 2957
chr4 391920 0.21% 2151
chr5 448493 0.25% 2469
chr6 494866 0.29% 2722
chr7 450985 0.28% 2461
chr8 394565 0.27% 2190
chr9 407038 0.29% 2263
chr10 425978 0.32% 2348
chr11 535697 0.40% 2871
chr12 467527 0.35% 2538
chr13 185520 0.16% 1037
chr14 328613 0.31% 1781
chr15 308082 0.30% 1694
chr16 392189 0.43% 2094
chr17 544079 0.65% 2957
chr18 180538 0.22% 984
chr19 575559 0.98% 2978
chr20 275623 0.43% 1546
chr21 106835 0.23% 576
chr22 253613 0.50% 1371
chrX 199667 0.13% 1134
chrY 5134 0.01% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51787 4 880 183.39 180
global segment-length histogram

Files

Filename Size md5
ENCFF087IIE.bed.gz 551.86 KB 1b9f4c76eded2b15f6f7db92bb46be02
ENCFF087IIE.tabix.bed.gz 501.65 KB 675917ead88373977b9cfacdb130efd5
ENCFF087IIE.tabix.bed.gz.tbi 251.53 KB a77c6d59bbd83ddd9f2c332309b9714e
genomic_resource.yaml 2.13 KB 9f4c13fe6bb6d4c00c59dc9db7a45e1a
statistics/