DNase-seq_ENCSR000EJC
DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"]
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| Id: | DNase-seq/ENCSR000EJC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF756GZS|/files/ENCFF756GZS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN205JWF|/analyses/ENCAN205JWF/} has in progress subobject document {fd78bc8e-3f52-4133-9d25-4accb9ca3ac9|/documents/fd78bc8e-3f52-4133-9d25-4accb9ca3ac9/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJC | float |
DNase-seq_ENCSR000EJC |
DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"]
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[0.0387, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF126AGH.bed.gz | 1.03 MB | 38fa9bad5d56f91972f4e12ee5045750 |
| ENCFF126AGH.bed.gz.dvc | 101.0 B | 0de21b24545bdc286fda73c19810205f |
| ENCFF126AGH.tabix.bed.gz | 973.58 KB | dd37a283b7dc8cbdd9d980134dce81e0 |
| ENCFF126AGH.tabix.bed.gz.dvc | 106.0 B | a7dd41a16c2fa613107d4be53fee4d25 |
| ENCFF126AGH.tabix.bed.gz.tbi | 361.91 KB | 74633868521aae4ed55e264bd357e07a |
| ENCFF126AGH.tabix.bed.gz.tbi.dvc | 110.0 B | c9f5355923f35f71dcb970db30124618 |
| genomic_resource.yaml | 2.13 KB | a30ae35b5f9f6608ebcf4bda34fd06f6 |
| genomic_resource_original.yaml | 2.06 KB | 3b514bf7e49a1cbfbdda05b4ea6fb853 |
| statistics/ |