DNase-seq_ENCSR000EJA
DNase-seq ENCSR000EJA [biosample_summary="Homo sapiens H54"]
×
| Id: | DNase-seq/ENCSR000EJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EJA [biosample_summary="Homo sapiens H54"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN025HUZ|/analyses/ENCAN025HUZ/} has in progress subobject document {ef05f64c-a732-4751-984a-54235e9b5bd8|/documents/ef05f64c-a732-4751-984a-54235e9b5bd8/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF418HNN|/files/ENCFF418HNN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJA | float |
DNase-seq_ENCSR000EJA |
DNase-seq ENCSR000EJA [biosample_summary="Homo sapiens H54"]
|
|
[0.0854, 16.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF224XHZ.bed.gz | 885.77 KB | c2b629dea9029d80a5480d8675197ebc |
| ENCFF224XHZ.bed.gz.dvc | 100.0 B | efbb95ffcd0f3dfbc02af149007c57e2 |
| ENCFF224XHZ.tabix.bed.gz | 801.12 KB | df46acf25d0874c1e381e50bfb1523d0 |
| ENCFF224XHZ.tabix.bed.gz.dvc | 106.0 B | bd7aaef419ba36c75968cf03fb3f97a6 |
| ENCFF224XHZ.tabix.bed.gz.tbi | 377.94 KB | 84718d4c25a8693952cb9a38a931dbe5 |
| ENCFF224XHZ.tabix.bed.gz.tbi.dvc | 110.0 B | 0cef71382e5abeca4a9d6af1694c3ef0 |
| genomic_resource.yaml | 2.12 KB | ae760617f45f8366891e68d75acb5a7d |
| genomic_resource_original.yaml | 2.05 KB | 7f339b8855f446a84ef284611576eccf |
| statistics/ |