DNase-seq_ENCSR000EIY
DNase-seq ENCSR000EIY [biosample_summary="Homo sapiens frontal cortex tissue female adult (67 years) and female adult (80 years)"]
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| Id: | DNase-seq/ENCSR000EIY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIY [biosample_summary="Homo sapiens frontal cortex tissue female adult (67 years) and female adult (80 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female adult (80 years) female adult (67 years) output_type: peaks audit_internal_action: Released analysis {ENCAN775PAI|/analyses/ENCAN775PAI/} has in progress subobject document {8a9fa208-e9e5-48e8-b04d-e453342c81d0|/documents/8a9fa208-e9e5-48e8-b04d-e453342c81d0/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF948TWI|/files/ENCFF948TWI/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIY | float |
DNase-seq_ENCSR000EIY |
DNase-seq ENCSR000EIY [biosample_summary="Homo sapiens frontal cortex tissue female adult (67 years) and female adult (80 years)"]
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[0.0816, 39.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF635VUD.bed.gz | 620.22 KB | 555b0dce2d224fc1764624df7cb077f8 |
| ENCFF635VUD.bed.gz.dvc | 100.0 B | 9441728241eae00ea0f5fa430293576e |
| ENCFF635VUD.tabix.bed.gz | 571.52 KB | c4940696352962f1566d1c74de98670a |
| ENCFF635VUD.tabix.bed.gz.dvc | 106.0 B | 2b318b76b72e3a5dbe0e1ba448f18538 |
| ENCFF635VUD.tabix.bed.gz.tbi | 235.23 KB | d86f72c4ccdee069250bc62956bf288a |
| ENCFF635VUD.tabix.bed.gz.tbi.dvc | 110.0 B | 1ab0c77734159212f124ad8e8df709c6 |
| genomic_resource.yaml | 2.39 KB | f86f29ef9fac808656e07bb0ecb02818 |
| genomic_resource_original.yaml | 2.25 KB | bb400e119f3f3a0389307fcad8556936 |
| statistics/ |