type: position_score
table:
  filename: ENCFF635VUD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EIY
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EIY [TISSUE: Homo sapiens frontal cortex tissue female
    adult (67 years) and female adult (80 years)]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: female adult (80 years) female adult (67 years)


    **output\_type**: peaks


    **audit\_internal\_action**: Released analysis {ENCAN775PAI|/analyses/ENCAN775PAI/}
    has in progress subobject document {8a9fa208-e9e5-48e8-b04d-e453342c81d0|/documents/8a9fa208-e9e5-48e8-b04d-e453342c81d0/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF948TWI|/files/ENCFF948TWI/} processed by DNase-seq ENCODE4
    v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly  have
    a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EIY
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female adult (80 years) female adult (67 years)
    biosample_summary: Homo sapiens frontal cortex tissue female adult (67 years)
      and female adult (80 years)
    replication_type: anisogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0001870/
    perturbed: false
    doi: 10.17989/ENCSR000EIY
    date_created: '2014-01-30T18:57:13.053949+00:00'
    date_released: '2012-08-28'
    submitter_comment: ''
