DNase-seq_ENCSR000EIX
DNase-seq ENCSR000EIX [biosample_summary="Homo sapiens AG20443"]
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| Id: | DNase-seq/ENCSR000EIX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIX [biosample_summary="Homo sapiens AG20443"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN099UZW|/analyses/ENCAN099UZW/} has in progress subobject document {1487091b-7d0c-484f-8beb-6a938c02a19c|/documents/1487091b-7d0c-484f-8beb-6a938c02a19c/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF442RTZ|/files/ENCFF442RTZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIX | float |
DNase-seq_ENCSR000EIX |
DNase-seq ENCSR000EIX [biosample_summary="Homo sapiens AG20443"]
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[0.0286, 19.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF833DLW.bed.gz | 2.05 MB | 2603a0aeb0b2928e226497f5d200cecf |
| ENCFF833DLW.bed.gz.dvc | 101.0 B | 4419fffdcb04998e0bb41716dffad407 |
| ENCFF833DLW.tabix.bed.gz | 1.88 MB | 1157859a8342bbed383e35d387404745 |
| ENCFF833DLW.tabix.bed.gz.dvc | 107.0 B | e59b027992f31932b8813e3e0d7b7a1d |
| ENCFF833DLW.tabix.bed.gz.tbi | 585.73 KB | 7af9f0a1a4f32af30580f8389f80e48a |
| ENCFF833DLW.tabix.bed.gz.tbi.dvc | 110.0 B | 105fd4795499599106a12bd07c9e3c50 |
| genomic_resource.yaml | 2.13 KB | e467e5eca3127dbbce7c1fc3a9260541 |
| genomic_resource_original.yaml | 2.06 KB | 8b9c0903bed12da9e66c9a826df8231c |
| statistics/ |