DNase-seq_ENCSR000EIW
DNase-seq ENCSR000EIW [biosample_summary="Homo sapiens AG08396"]
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| Id: | DNase-seq/ENCSR000EIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIW [biosample_summary="Homo sapiens AG08396"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN474AWO|/analyses/ENCAN474AWO/} has in progress subobject document {14486326-4790-446f-898c-14d55308c748|/documents/14486326-4790-446f-898c-14d55308c748/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF653BZP|/files/ENCFF653BZP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIW | float |
DNase-seq_ENCSR000EIW |
DNase-seq ENCSR000EIW [biosample_summary="Homo sapiens AG08396"]
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[0.0394, 28.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF378HOL.bed.gz | 1.47 MB | 523506f105b21248ba5081ec96b95e8b |
| ENCFF378HOL.bed.gz.dvc | 101.0 B | 2f1ef02dab1ee39c95d71b1acf603e13 |
| ENCFF378HOL.tabix.bed.gz | 1.34 MB | fce81f11d4b4e9dbfa82bb3d8c7078a1 |
| ENCFF378HOL.tabix.bed.gz.dvc | 107.0 B | 19cd3c76339f174e2d0e2cb8219f4c83 |
| ENCFF378HOL.tabix.bed.gz.tbi | 495.06 KB | 7b365474755752429b22f1460b99d595 |
| ENCFF378HOL.tabix.bed.gz.tbi.dvc | 110.0 B | 79627b2ce554c5a1af022abf73e1228b |
| genomic_resource.yaml | 2.13 KB | 6466aaa2ebaa8ff9eb805e9196e25101 |
| genomic_resource_original.yaml | 2.06 KB | ddb38bcf0215cba421b66f4e7e631daa |
| statistics/ |